title: Spark runs on Yarn cluster exitCode=13:
body: <p>I am a spark/yarn newbie, run into exitCode=13 when I submit a spark job on yarn cluster. When the spark job is running in local mode, everything is fine.</p>
  
  <p>The command I used is:</p>
  
  <pre><code>/usr/hdp/current/spark-client/bin/spark-submit --class com.test.sparkTest --master yarn --deploy-mode cluster --num-executors 40 --executor-cores 4 --driver-memory 17g --executor-memory 22g --files /usr/hdp/current/spark-client/conf/hive-site.xml /home/user/sparkTest.jar*
  </code></pre>
  
  <p><strong>Spark Error Log:</strong></p>
  
  <pre><code>16/04/12 17:59:30 INFO Client:
           client token: N/A
           diagnostics: Application application_1459460037715_23007 failed 2 times due to AM Container for appattempt_1459460037715_23007_000002 exited with  exitCode: 13
  For more detailed output, check application tracking page:http://b-r06f2-prod.phx2.cpe.net:8088/cluster/app/application_1459460037715_23007Then, click on links to logs of each attempt.
  Diagnostics: Exception from container-launch.
  Container id: container_e40_1459460037715_23007_02_000001
  Exit code: 13
  Stack trace: ExitCodeException exitCode=13:
          at org.apache.hadoop.util.Shell.runCommand(Shell.java:576)
          at org.apache.hadoop.util.Shell.run(Shell.java:487)
          at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:753)
          at org.apache.hadoop.yarn.server.nodemanager.DefaultContainerExecutor.launchContainer(DefaultContainerExecutor.java:211)
          at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:302)
          at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:82)
  
  
  **Yarn logs**
  
      16/04/12 23:55:35 INFO mapreduce.TableInputFormatBase: Input split length: 977 M bytes.
  16/04/12 23:55:41 INFO yarn.ApplicationMaster: Waiting for spark context initialization ...
  16/04/12 23:55:51 INFO yarn.ApplicationMaster: Waiting for spark context initialization ...
  16/04/12 23:56:01 INFO yarn.ApplicationMaster: Waiting for spark context initialization ...
  16/04/12 23:56:11 INFO yarn.ApplicationMaster: Waiting for spark context initialization ...
  16/04/12 23:56:11 INFO client.ConnectionManager$HConnectionImplementation: Closing zookeeper sessionid=0x152f0b4fc0e7488
  16/04/12 23:56:11 INFO zookeeper.ZooKeeper: Session: 0x152f0b4fc0e7488 closed
  16/04/12 23:56:11 INFO zookeeper.ClientCnxn: EventThread shut down
  16/04/12 23:56:11 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 2). 2003 bytes result sent to driver
  16/04/12 23:56:11 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 2) in 82134 ms on localhost (2/3)
  16/04/12 23:56:17 INFO client.ConnectionManager$HConnectionImplementation: Closing zookeeper sessionid=0x4508c270df0980316/04/12 23:56:17 INFO zookeeper.ZooKeeper: Session: 0x4508c270df09803 closed *
  ...
      16/04/12 23:56:21 ERROR yarn.ApplicationMaster: SparkContext did not initialize after waiting for 100000 ms. Please check earlier log output for errors. Failing the application.
  16/04/12 23:56:21 INFO yarn.ApplicationMaster: Final app status: FAILED, exitCode: 13, (reason: Timed out waiting for SparkContext.)
  16/04/12 23:56:21 INFO spark.SparkContext: Invoking stop() from shutdown hook *
  </code></pre>