title: AutoDock: MGLTools Python, error list index out of range, using MGL version 1.5.7
body: <p>I'm an absolute beginner, so I'll try to be elaborate:</p>
  <p>I've got MGL version 1.5.7 installed (current latest version),
  wanted to save my protein as a .pdbqt format by:
  -&gt; file -&gt; read molecule -&gt; protein.pdb -&gt; Grid/Macromolecule/Choose</p>
  <p>but it gave me the following error:
  <a href="https://i.stack.imgur.com/o775Q.png" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/o775Q.png" alt="IndexError: List index out of range" /></a></p>
  <p>IndexError: list index out of range</p>
  <p>I saw the question was posted 10 years earlier as well and the answer was that it should have been resolved with the 1.5.6 version, so I don't know how to solve it in my situation. Has anyone else run into this in the current version?
  What does the error mean and what can I do about it.</p>
  <p>Thanks!</p>
  <p>ps. sorry for the awful format</p>