title: Scatter plot with density in Matlab
body: <p>I would like to plot data set 1 and data set 2 in one plot vertical. Unfortunately the data is huge, so it is just a smear of points and can't see the density. I tried hist3 and other suggestions but it overwrites my data sets and the binning looks awful.</p>
  
  <p>Is there another way to plot scatter density plots? Is there really no Matlab function for it? If not, which program could I use to easy generate such a plot?</p>
  
  <p>A mix between this two examples:</p>
  
  <p><img src="https://blogs.mathworks.com/images/pick/jiro/potw_notboxplot/potw_notboxplot_02.png" alt="Example1"></p>
  
  <p><a href="https://i.stack.imgur.com/6eToP.jpg" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/6eToP.jpg" alt="Example2"></a><br>
  <sub>(source: <a href="http://www.bcgsc.ca/people/malachig/htdocs/alexa_platform/alexa_seq/FL_Trans/images/HS1361/ExonRegionVsGeneExpression_Log2.jpeg" rel="nofollow noreferrer">bcgsc.ca</a>)</sub>  </p>