title: AzureMLsdk estimator/ScriptRunConfig gets stuck when building R environments after launching remote run via estimator or ScriptRunConfig
body: <p>I have been trying in vain for a couple of days now to launch a simple 'helloWorld.R' script on AzureML from a separate R script using AzureML on a separate compute, using either the deprecated 'estimator' class from a separate R script, or the recommended ScriptRunConfig approach from a separate Python script.</p>
  <p>The problem is limited to R scripts, everything works fine when I do the same and try launching a helloWorld.py script using ScriptRunConfig.</p>
  <p>Azure invariably gets stuck in step 19 of the image building.</p>
  <p>Here's the code I use:</p>
  <pre><code>library(azuremlsdk)
  
  ws &lt;- load_workspace_from_config()
  
  experiment_name &lt;- &quot;my-R-experiments&quot;
  
  exp &lt;- experiment(ws, experiment_name)
  
  est &lt;- estimator(source_directory = &quot;MyTests&quot;,entry_script = &quot;helloWorld.R&quot;,compute_target = 'bvbml4')
  
  run &lt;- submit_experiment(exp, est)
  </code></pre>
  <p>Here's the 20_image_build_log.txt file output of my experiment/run, which gets up to step 19. Any suggestions to troubleshoot this are much appreciated.</p>
  <pre><code>2022/03/20 07:59:19 Downloading source code...
  2022/03/20 07:59:20 Finished downloading source code
  2022/03/20 07:59:20 Creating Docker network: acb_default_network, driver: 'bridge'
  2022/03/20 07:59:21 Successfully set up Docker network: acb_default_network
  2022/03/20 07:59:21 Setting up Docker configuration...
  2022/03/20 07:59:21 Successfully set up Docker configuration
  2022/03/20 07:59:21 Logging in to registry: 27abccf043c24fbca68247a94d4e7f2e.azurecr.io
  2022/03/20 07:59:22 Successfully logged into 27abccf043c24fbca68247a94d4e7f2e.azurecr.io
  2022/03/20 07:59:22 Executing step ID: acb_step_0. Timeout(sec): 5400, Working directory: '', Network: 'acb_default_network'
  2022/03/20 07:59:22 Scanning for dependencies...
  2022/03/20 07:59:22 Successfully scanned dependencies
  2022/03/20 07:59:22 Launching container with name: acb_step_0
  Sending build context to Docker daemon  67.58kB
  
  Step 1/26 : FROM mcr.microsoft.com/azureml/base:openmpi3.1.2-ubuntu16.04@sha256:8bc7ffc7142fb2914e40e8d64fed7bb89f7d087b670c0cb3168d241a5e908e98
  mcr.microsoft.com/azureml/base:openmpi3.1.2-ubuntu16.04@sha256:8bc7ffc7142fb2914e40e8d64fed7bb89f7d087b670c0cb3168d241a5e908e98: Pulling from azureml/base
  3386e6af03b0: Pulling fs layer
  49ac0bbe6c8e: Pulling fs layer
  d1983a67e104: Pulling fs layer
  1a0f3a523f04: Pulling fs layer
  682f5066db89: Pulling fs layer
  f8e72cca56c5: Pulling fs layer
  0fd03f8f74b9: Pulling fs layer
  926adb528adb: Pulling fs layer
  7161d6556851: Pulling fs layer
  99339a70e7aa: Pulling fs layer
  2bdbf3988b02: Pulling fs layer
  0fd03f8f74b9: Waiting
  926adb528adb: Waiting
  7161d6556851: Waiting
  99339a70e7aa: Waiting
  2bdbf3988b02: Waiting
  1a0f3a523f04: Waiting
  682f5066db89: Waiting
  f8e72cca56c5: Waiting
  49ac0bbe6c8e: Verifying Checksum
  49ac0bbe6c8e: Download complete
  d1983a67e104: Verifying Checksum
  d1983a67e104: Download complete
  3386e6af03b0: Verifying Checksum
  3386e6af03b0: Download complete
  3386e6af03b0: Pull complete
  49ac0bbe6c8e: Pull complete
  d1983a67e104: Pull complete
  1a0f3a523f04: Verifying Checksum
  1a0f3a523f04: Pull complete
  f8e72cca56c5: Verifying Checksum
  f8e72cca56c5: Download complete
  682f5066db89: Verifying Checksum
  682f5066db89: Download complete
  7161d6556851: Verifying Checksum
  7161d6556851: Download complete
  99339a70e7aa: Verifying Checksum
  99339a70e7aa: Download complete
  0fd03f8f74b9: Verifying Checksum
  0fd03f8f74b9: Download complete
  2bdbf3988b02: Verifying Checksum
  2bdbf3988b02: Download complete
  926adb528adb: Verifying Checksum
  926adb528adb: Download complete
  682f5066db89: Pull complete
  f8e72cca56c5: Pull complete
  0fd03f8f74b9: Pull complete
  926adb528adb: Pull complete
  7161d6556851: Pull complete
  99339a70e7aa: Pull complete
  2bdbf3988b02: Pull complete
  Digest: sha256:8bc7ffc7142fb2914e40e8d64fed7bb89f7d087b670c0cb3168d241a5e908e98
  Status: Downloaded newer image for mcr.microsoft.com/azureml/base:openmpi3.1.2-ubuntu16.04@sha256:8bc7ffc7142fb2914e40e8d64fed7bb89f7d087b670c0cb3168d241a5e908e98
   ---&gt; 6ac3db102f47
  Step 2/26 : USER root
   ---&gt; Running in 97134259f5d2
  Removing intermediate container 97134259f5d2
   ---&gt; e52ba280c415
  Step 3/26 : RUN mkdir -p $HOME/.cache
   ---&gt; Running in 356340740e37
  Removing intermediate container 356340740e37
   ---&gt; 2c6ab3b672b2
  Step 4/26 : WORKDIR /
   ---&gt; Running in ce765875950b
  Removing intermediate container ce765875950b
   ---&gt; ca639597ce0c
  Step 5/26 : COPY azureml-environment-setup/99brokenproxy /etc/apt/apt.conf.d/
   ---&gt; b55cf6699865
  Step 6/26 : RUN if dpkg --compare-versions `conda --version | grep -oE '[^ ]+$'` lt 4.4.11; then conda install conda==4.4.11; fi
   ---&gt; Running in 2ff7a88ce65f
  Removing intermediate container 2ff7a88ce65f
   ---&gt; 5b2e9b95697a
  Step 7/26 : COPY azureml-environment-setup/mutated_conda_dependencies.yml azureml-environment-setup/mutated_conda_dependencies.yml
   ---&gt; 24de215f48fa
  Step 8/26 : RUN ldconfig /usr/local/cuda/lib64/stubs &amp;&amp; conda env create -p /azureml-envs/azureml_da3e97fcb51801118b8e80207f3e01ad -f azureml-environment-setup/mutated_conda_dependencies.yml &amp;&amp; rm -rf &quot;$HOME/.cache/pip&quot; &amp;&amp; conda clean -aqy &amp;&amp; CONDA_ROOT_DIR=$(conda info --root) &amp;&amp; rm -rf &quot;$CONDA_ROOT_DIR/pkgs&quot; &amp;&amp; find &quot;$CONDA_ROOT_DIR&quot; -type d -name __pycache__ -exec rm -rf {} + &amp;&amp; ldconfig
   ---&gt; Running in a81e8638d3c6
  Solving environment: ...working... 
  done
   [91m
  
  ==&gt; WARNING: A newer version of conda exists. &lt;==
    current version: 4.5.11
    latest version: 4.12.0
  
  Please update conda by running
  
      $ conda update -n base -c defaults conda
  
  
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  Downloading and Extracting Packages
  Preparing transaction: ...working... done
  Verifying transaction: ...working... done
  Executing transaction: ...working... done
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    Downloading configparser-3.7.4-py2.py3-none-any.whl (22 kB)
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    Downloading json-logging-py-0.2.tar.gz (3.6 kB)
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  </code></pre>
  <p>(I have skipped the full listed of packages here, to remain below the 30000 character limit imposed by Stack Overflow)</p>
  <pre><code>Collecting typing-extensions&gt;=3.6.4; python_version &lt; &quot;3.8&quot;
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  Building wheels for collected packages: json-logging-py, fusepy, wrapt
    Building wheel for json-logging-py (setup.py): started
    Building wheel for json-logging-py (setup.py): finished with status 'done'
    Created wheel for json-logging-py: filename=json_logging_py-0.2-py3-none-any.whl size=3924 sha256=689b245af029f82e58cd16b76ae31977780ae8a2bd7a8c4025c740599cbd694f
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    Stored in directory: /root/.cache/pip/wheels/21/5c/83/1dd7e8a232d12227e5410120f4374b33adeb4037473105b079
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    Created wheel for wrapt: filename=wrapt-1.12.1-cp36-cp36m-linux_x86_64.whl size=66297 sha256=798750bfe50a2b5cbeb18c20b9980e8118809945d5b1bdbd3465f93758a35ae3
    Stored in directory: /root/.cache/pip/wheels/32/42/7f/23cae9ff6ef66798d00dc5d659088e57dbba01566f6c60db63
  Successfully built json-logging-py fusepy wrapt
  Installing collected packages: configparser, json-logging-py, pytz, backports.weakref, backports.tempfile, six, charset-normalizer, urllib3, idna, PySocks, requests, azure-core, azure-common, azure-mgmt-core, isodate, oauthlib, requests-oauthlib, msrest, azure-mgmt-storage, jmespath, pycparser, cffi, cryptography, python-dateutil, PyJWT, adal, msrestazure, azure-mgmt-authorization, pathspec, pkginfo, humanfriendly, zipp, typing-extensions, importlib-metadata, argcomplete, pyyaml, tabulate, pygments, knack, pyopenssl, pyasn1, ndg-httpsclient, azure-mgmt-keyvault, jeepney, SecretStorage, jsonpickle, azure-graphrbac, azure-mgmt-resource, bcrypt, pynacl, paramiko, msal, portalocker, msal-extensions, websocket-client, docker, pyparsing, packaging, azure-mgmt-containerregistry, contextlib2, azureml-core, azureml-dataprep-rslex, cloudpickle, azureml-dataprep-native, azure-identity, distro, dotnetcore2, azureml-dataprep, numpy, pyarrow, fusepy, azureml-dataset-runtime, dataclasses, Werkzeug, itsdangerous, MarkupSafe, Jinja2, click, flask, wrapt, inference-schema, applicationinsights, gunicorn, azureml-inference-server-http, azureml-defaults
  Successfully installed Jinja2-3.0.3 MarkupSafe-2.0.1 PyJWT-2.3.0 PySocks-1.7.1 SecretStorage-3.3.1 Werkzeug-2.0.3 adal-1.2.7 applicationinsights-0.11.10 argcomplete-1.12.3 azure-common-1.1.28 azure-core-1.21.1 azure-graphrbac-0.61.1 azure-identity-1.7.0 azure-mgmt-authorization-0.61.0 azure-mgmt-containerregistry-8.2.0 azure-mgmt-core-1.3.0 azure-mgmt-keyvault-9.3.0 azure-mgmt-resource-20.1.0 azure-mgmt-storage-19.1.0 azureml-core-1.39.0.post1 azureml-dataprep-2.27.1 azureml-dataprep-native-38.0.0 azureml-dataprep-rslex-2.3.1 azureml-dataset-runtime-1.39.0 azureml-defaults-1.39.0 azureml-inference-server-http-0.4.10 backports.tempfile-1.0 backports.weakref-1.0.post1 bcrypt-3.2.0 cffi-1.15.0 charset-normalizer-2.0.12 click-8.0.4 cloudpickle-2.0.0 configparser-3.7.4 contextlib2-21.6.0 cryptography-36.0.2 dataclasses-0.8 distro-1.7.0 docker-5.0.3 dotnetcore2-2.1.23 flask-1.0.3 fusepy-3.0.1 gunicorn-20.1.0 humanfriendly-10.0 idna-3.3 importlib-metadata-4.8.3 inference-schema-1.3.0 isodate-0.6.1 itsdangerous-1.1.0 jeepney-0.7.1 jmespath-0.10.0 json-logging-py-0.2 jsonpickle-2.1.0 knack-0.9.0 msal-1.17.0 msal-extensions-0.3.1 msrest-0.6.21 msrestazure-0.6.4 ndg-httpsclient-0.5.1 numpy-1.19.5 oauthlib-3.2.0 packaging-21.3 paramiko-2.10.3 pathspec-0.9.0 pkginfo-1.8.2 portalocker-2.4.0 pyarrow-3.0.0 pyasn1-0.4.8 pycparser-2.21 pygments-2.11.2 pynacl-1.5.0 pyopenssl-21.0.0 pyparsing-3.0.7 python-dateutil-2.8.2 pytz-2022.1 pyyaml-6.0 requests-2.27.1 requests-oauthlib-1.3.1 six-1.16.0 tabulate-0.8.9 typing-extensions-4.1.1 urllib3-1.26.7 websocket-client-1.3.1 wrapt-1.12.1 zipp-3.6.0
   [91m
   [0m#
  # To activate this environment, use:
  # &gt; source activate /azureml-envs/azureml_da3e97fcb51801118b8e80207f3e01ad
  #
  # To deactivate an active environment, use:
  # &gt; source deactivate
  #
  
  Removing intermediate container a81e8638d3c6
   ---&gt; 1c0ef8dbb1ad
  Step 9/26 : ENV PATH /azureml-envs/azureml_da3e97fcb51801118b8e80207f3e01ad/bin:$PATH
   ---&gt; Running in 2bb7c01b6789
  Removing intermediate container 2bb7c01b6789
   ---&gt; 9fd076d00f5d
  Step 10/26 : COPY azureml-environment-setup/send_conda_dependencies.py azureml-environment-setup/send_conda_dependencies.py
   ---&gt; 59a7f90d5a0f
  Step 11/26 : RUN echo &quot;Copying environment context&quot;
   ---&gt; Running in 8b550a1369d7
  Copying environment context
  Removing intermediate container 8b550a1369d7
   ---&gt; 77e810bff61c
  Step 12/26 : COPY azureml-environment-setup/environment_context.json azureml-environment-setup/environment_context.json
   ---&gt; e0a49793ed23
  Step 13/26 : RUN python /azureml-environment-setup/send_conda_dependencies.py -p /azureml-envs/azureml_da3e97fcb51801118b8e80207f3e01ad
   ---&gt; Running in 0f34dc6612bf
  Report materialized dependencies for the environment
  Reading environment context
  Exporting conda environment
  Exception occured on getting conda environment details
  Failed to send materialized environment details
  Removing intermediate container 0f34dc6612bf
   ---&gt; 7a438114337b
  Step 14/26 : ENV AZUREML_CONDA_ENVIRONMENT_PATH /azureml-envs/azureml_da3e97fcb51801118b8e80207f3e01ad
   ---&gt; Running in 6946d6935ffc
  Removing intermediate container 6946d6935ffc
   ---&gt; 1462ac58f8ef
  Step 15/26 : ENV LD_LIBRARY_PATH /azureml-envs/azureml_da3e97fcb51801118b8e80207f3e01ad/lib:$LD_LIBRARY_PATH
   ---&gt; Running in 04726bfb72a0
  Removing intermediate container 04726bfb72a0
   ---&gt; 8148db5a55b0
  Step 16/26 : ENV CONDA_DEFAULT_ENV=azureml_da3e97fcb51801118b8e80207f3e01ad CONDA_PREFIX=/azureml-envs/azureml_da3e97fcb51801118b8e80207f3e01ad
   ---&gt; Running in 0e8b8d7e3d01
  Removing intermediate container 0e8b8d7e3d01
   ---&gt; 3f571b74a9e9
  Step 17/26 : RUN conda install -p /azureml-envs/azureml_da3e97fcb51801118b8e80207f3e01ad -y pip=20.1.1
   ---&gt; Running in b1446052508e
  Solving environment: ...working... done
   [91m
  
  ==&gt; WARNING: A newer version of conda exists. &lt;==
    current version: 4.5.11
    latest version: 4.12.0
  
  Please update conda by running
  
      $ conda update -n base -c defaults conda
  
  
  ca-certificates-2022 | 130 KB    |            |   0%  [0m [91m
  ca-certificates-2022 | 130 KB    | ########## | 100%  [0m [91m
  
  openssl-1.0.2u       | 3.1 MB    |            |   0%  [0m [91m
  openssl-1.0.2u       | 3.1 MB    | #######6   |  76%  [0m [91m
  openssl-1.0.2u       | 3.1 MB    | #########8 |  98%  [0m [91m
  openssl-1.0.2u       | 3.1 MB    | ########## | 100%  [0m [91m
  
  certifi-2021.5.30    | 141 KB    |            |   0%  [0m [91m
  certifi-2021.5.30    | 141 KB    | ########## | 100%  [0m [91m
  
  pip-20.1.1           | 2.0 MB    |            |   0%  [0m [91m
  pip-20.1.1           | 2.0 MB    | #######8   |  79%  [0m [91m
  pip-20.1.1           | 2.0 MB    | #########7 |  97%  [0m [91m
  pip-20.1.1           | 2.0 MB    | ########## | 100%  [0m
  ## Package Plan ##
  
    environment location: /azureml-envs/azureml_da3e97fcb51801118b8e80207f3e01ad
  
    added / updated specs: 
      - pip=20.1.1
  
  The following packages will be downloaded:
  
      package                    |            build
      ---------------------------|-----------------
      ca-certificates-2022.2.1   |       h06a4308_0         130 KB
      openssl-1.0.2u             |       h7b6447c_0         3.1 MB
      certifi-2021.5.30          |   py36h06a4308_0         141 KB
      pip-20.1.1                 |           py36_1         2.0 MB
      ------------------------------------------------------------
                                             Total:         5.4 MB
  
  The following packages will be UPDATED:
  
      ca-certificates: 2020.10.14-0      anaconda --&gt; 2022.2.1-h06a4308_0     
      certifi:         2020.6.20-py36_0  anaconda --&gt; 2021.5.30-py36h06a4308_0
      openssl:         1.0.2u-h7b6447c_0 anaconda --&gt; 1.0.2u-h7b6447c_0       
  
  The following packages will be DOWNGRADED:
  
      pip:             20.2.4-py36_0     anaconda --&gt; 20.1.1-py36_1           
  
  Downloading and Extracting Packages
  Preparing transaction: ...working... done
  Verifying transaction: ...working... done
  Executing transaction: ...working... done
   [91m
   [0mRemoving intermediate container b1446052508e
   ---&gt; 6f0cd6b3aaba
  Step 18/26 : RUN conda install -p /azureml-envs/azureml_da3e97fcb51801118b8e80207f3e01ad -c conda-forge -y mscorefonts
   ---&gt; Running in e7199d3c88fb
  Solving environment: ...working... 
  done
   [91m
  
  ==&gt; WARNING: A newer version of conda exists. &lt;==
    current version: 4.5.11
    latest version: 4.12.0
  
  Please update conda by running
  
      $ conda update -n base -c defaults conda
  
  
  mscorefonts-0.0.1    | 3.1 MB    |            |   0%  [0m [91m
  mscorefonts-0.0.1    | 3.1 MB    | #7         |  18%  [0m [91m
  mscorefonts-0.0.1    | 3.1 MB    | ##3        |  23%  [0m [91m
  mscorefonts-0.0.1    | 3.1 MB    | #######9   |  79%  [0m [91m
  mscorefonts-0.0.1    | 3.1 MB    | #########6 |  96%  [0m [91m
  mscorefonts-0.0.1    | 3.1 MB    | ########## | 100%  [0m [91m
  
  certifi-2021.5.30    | 141 KB    |            |   0%  [0m [91m
  certifi-2021.5.30    | 141 KB    | ########## | 100%  [0m [91m
  
  ca-certificates-2021 | 139 KB    |            |   0%  [0m [91m
  ca-certificates-2021 | 139 KB    | ########## | 100%  [0m [91m
  
  openssl-1.0.2u       | 3.2 MB    |            |   0%  [0m [91m
  openssl-1.0.2u       | 3.2 MB    | #######6   |  76%  [0m [91m
  openssl-1.0.2u       | 3.2 MB    | #########7 |  98%  [0m [91m
  openssl-1.0.2u       | 3.2 MB    | ########## | 100%  [0m [91m
  
  python_abi-3.6       | 4 KB      |            |   0%  [0m [91m
  python_abi-3.6       | 4 KB      | ########## | 100%  [0m
  ## Package Plan ##
  
    environment location: /azureml-envs/azureml_da3e97fcb51801118b8e80207f3e01ad
  
    added / updated specs: 
      - mscorefonts
  
  The following packages will be downloaded:
  
      package                    |            build
      ---------------------------|-----------------
      mscorefonts-0.0.1          |                3         3.1 MB  conda-forge
      certifi-2021.5.30          |   py36h5fab9bb_0         141 KB  conda-forge
      ca-certificates-2021.10.8  |       ha878542_0         139 KB  conda-forge
      openssl-1.0.2u             |       h516909a_0         3.2 MB  conda-forge
      python_abi-3.6             |          2_cp36m           4 KB  conda-forge
      ------------------------------------------------------------
                                             Total:         6.5 MB
  
  The following NEW packages will be INSTALLED:
  
      mscorefonts:     0.0.1-3                  conda-forge
      python_abi:      3.6-2_cp36m              conda-forge
  
  The following packages will be UPDATED:
  
      certifi:         2021.5.30-py36h06a4308_0             --&gt; 2021.5.30-py36h5fab9bb_0 conda-forge
      openssl:         1.0.2u-h7b6447c_0                    --&gt; 1.0.2u-h516909a_0        conda-forge
  
  The following packages will be DOWNGRADED:
  
      ca-certificates: 2022.2.1-h06a4308_0                  --&gt; 2021.10.8-ha878542_0     conda-forge
  
  Downloading and Extracting Packages
  Preparing transaction: ...working... done
  Verifying transaction: ...working... done
  Executing transaction: ...working... done
   [91m
   [0mRemoving intermediate container e7199d3c88fb
   ---&gt; d503ef5ca16a
  Step 19/26 : RUN conda install -p /azureml-envs/azureml_da3e97fcb51801118b8e80207f3e01ad -c r -y r-essentials=3.6.0 rpy2 r-checkpoint &amp;&amp; pip install --no-cache-dir azureml-defaults
   ---&gt; Running in 57e349f66f79
  Solving environment: ...working... 
  </code></pre>