title: Points in coordinates and shapefile in ft - Don't align even in same projection
body: <p>I am trying to run a point-in-polygon count in QGIS. I have a shapefile of San Diego zip codes in NAD83 (2230 EPSG). I have a delimited text file of points with lat/lon coordinates.</p>
  
  <p>In QGIS, I can get the points to overlay properly on the polygons in the viewer in the basic OTF projection. But I can't run the point-in-polygon count while they're in different projections. I have reprojected each file (saving the points as a shapefile) with identical projections in QGIS, but the geographies don't match up at all.</p>
  
  <p>I'm assuming my issue is that the lat/lon coordinates are in degrees and the NAD83 projection is in feet. I thought that reprojecting would solve this issue though? Clearly the files can be easily read together, they show up in the right place in the viewer with the OTF projection. This only works with a default custom CRS for OTF that appears to be handling the ft/lat-lon conflict. If I save all in a WGS layer like EPSG4326 or EPSG3857 then nothing aligns.</p>
  
  <p>Here is the text for the projection that is working:</p>
  
  <pre><code>    * Generated CRS (+proj=lcc +lat_1=32.78333333333333 +lat_2=33.88333333333333 
  +lat_0=32.16666666666666 +lon_0=-116.25 +x_0=2000000 +y_0=500000.0000000001 
  +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +units=us-ft +no_defs)
  </code></pre>