title: Spyder permission error
body: <p>I created virtual environment test and installed spyder in that environment
  activated and tested </p>
  
  <pre><code>source activate test 
  
   conda info -e
  # conda environments:
  #
  bin                      /home/myname/anaconda3/envs/bin
  conda-meta               /home/myname/anaconda3/envs/conda-meta
  include                  /home/myname/anaconda3/envs/include
  lib                      /home/myname/anaconda3/envs/lib
  share                    /home/myname/anaconda3/envs/share
  ssl                      /home/myname/anaconda3/envs/ssl
  test                  *  /home/myname/anaconda3/envs/test
  root                     /home/myname/anaconda3
  </code></pre>
  
  <p>When I try to run spyder I get the Permission denied error. Can not figure out why</p>
  
  <pre><code>myname - mycomp - ~/anaconda3/envs/test
  0 # spyder
  Traceback (most recent call last):
    File "/home/myname/anaconda3/envs/test/lib/python3.5/site-packages/spyder/app/mainwindow.py", line 2998, in main
      mainwindow = run_spyder(app, options, args)
    File "/home/myname/anaconda3/envs/test/lib/python3.5/site-packages/spyder/app/mainwindow.py", line 2902, in run_spyder
      main.setup()
    File "/home/myname/anaconda3/envs/test/lib/python3.5/site-packages/spyder/app/mainwindow.py", line 1153, in setup
      self.setup_layout(default=False)
    File "/home/myname/anaconda3/envs/test/lib/python3.5/site-packages/spyder/app/mainwindow.py", line 1414, in setup_layout
      self.setup_default_layouts('default', settings)
    File "/home/myname/anaconda3/envs/test/lib/python3.5/site-packages/spyder/app/mainwindow.py", line 1593, in setup_default_layouts
      widget.toggle_view(True)
    File "/home/myname/anaconda3/envs/test/lib/python3.5/site-packages/spyder/plugins/ipythonconsole.py", line 677, in toggle_view
      self.create_new_client(give_focus=False)
    File "/home/myname/anaconda3/envs/test/lib/python3.5/site-packages/spyder/plugins/ipythonconsole.py", line 862, in create_new_client
      connection_file=self._new_connection_file(),
    File "/home/myname/anaconda3/envs/test/lib/python3.5/site-packages/spyder/plugins/ipythonconsole.py", line 1340, in _new_connection_file
      os.makedirs(jupyter_runtime_dir())
    File "/home/myname/anaconda3/envs/test/lib/python3.5/os.py", line 231, in makedirs
      makedirs(head, mode, exist_ok)
    File "/home/myname/anaconda3/envs/test/lib/python3.5/os.py", line 241, in makedirs
      mkdir(name, mode)
  PermissionError: [Errno 13] Permission denied: '/run/user/myname'
  </code></pre>