gbaydin commited on
Commit
68f65c5
·
verified ·
1 Parent(s): b95793c

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +6 -6
README.md CHANGED
@@ -30,12 +30,12 @@ Each CSV file includes 36 columns describing various molecular attributes. A `sp
30
 
31
  ### Features
32
 
33
- * `inchi`: IUPAC International Chemical Identifier for the molecule.
34
  * `inchikey`: Hashed version of the InChI string, used for indexing.
35
- * `selfies`: SELFIES representation of the molecule (robust molecular string encoding).
36
- * `smiles`: SMILES string (Simplified Molecular Input Line Entry System).
37
  * `smiles_scaffold`: Murcko scaffold representation extracted from the molecule.
38
- * `formula`: Molecular formula, computed using RDKit.
39
  * `fingerprint_morgan`: Base64-encoded 2048-bit Morgan fingerprint (ECFP4) with chirality.
40
  * `num_atoms`: Number of heavy atoms (excluding hydrogens).
41
  * `num_atoms_all`: Total number of atoms (including hydrogens).
@@ -51,14 +51,14 @@ Each CSV file includes 36 columns describing various molecular attributes. A `sp
51
  * `physchem_h_donors`: Number of hydrogen bond donors.
52
  * `physchem_rotatable_bonds`: Number of rotatable bonds.
53
  * `physchem_fraction_csp3`: Fraction of sp3-hybridized carbon atoms.
54
- * `mass_spectrum_nist`: Mass spectrum data sourced from the NIST Chemistry WebBook, encoded in JCAMP-DX format as a string. Includes metadata, units, and a peak table in the format `m/z,intensity` (e.g., `43,9999 44,290 45,30`).
55
  * `complex_ma_score`: Molecular Assembly Index score (pathway complexity).
56
  * `complex_ma_runtime`: Wall-clock runtime (in seconds) to compute MA score.
57
  * `complex_bertz_score`: Bertz/Hendrickson/Ihlenfeldt (BHI) complexity score.
58
  * `complex_bertz_runtime`: Wall-clock runtime (in seconds) to compute BHI score.
59
  * `complex_boettcher_score`: Böttcher complexity score, based on atom environments.
60
  * `complex_boettcher_runtime`: Wall-clock runtime (in seconds) to compute Böttcher score.
61
- * `synth_sa_score`: Synthetic accessibility score, lower is easier to synthesize.
62
  * `meta_cas_number`: CAS Registry Number, if available.
63
  * `meta_names`: Common names or synonyms for the molecule.
64
  * `meta_iupac_name`: IUPAC name for the molecule.
 
30
 
31
  ### Features
32
 
33
+ * `inchi`: International Chemical Identifier (InChi).
34
  * `inchikey`: Hashed version of the InChI string, used for indexing.
35
+ * `selfies`: SELFIES (SELF-referencIng Embedded Strings) representation of the molecule.
36
+ * `smiles`: SMILES (Simplified Molecular Input Line Entry System) representation of the molecule.
37
  * `smiles_scaffold`: Murcko scaffold representation extracted from the molecule.
38
+ * `formula`: Molecular formula.
39
  * `fingerprint_morgan`: Base64-encoded 2048-bit Morgan fingerprint (ECFP4) with chirality.
40
  * `num_atoms`: Number of heavy atoms (excluding hydrogens).
41
  * `num_atoms_all`: Total number of atoms (including hydrogens).
 
51
  * `physchem_h_donors`: Number of hydrogen bond donors.
52
  * `physchem_rotatable_bonds`: Number of rotatable bonds.
53
  * `physchem_fraction_csp3`: Fraction of sp3-hybridized carbon atoms.
54
+ * `mass_spectrum_nist`: Mass spectrum data sourced from the NIST Chemistry WebBook, encoded in JCAMP-DX format as a string. Includes metadata, units, and a peak table.
55
  * `complex_ma_score`: Molecular Assembly Index score (pathway complexity).
56
  * `complex_ma_runtime`: Wall-clock runtime (in seconds) to compute MA score.
57
  * `complex_bertz_score`: Bertz/Hendrickson/Ihlenfeldt (BHI) complexity score.
58
  * `complex_bertz_runtime`: Wall-clock runtime (in seconds) to compute BHI score.
59
  * `complex_boettcher_score`: Böttcher complexity score, based on atom environments.
60
  * `complex_boettcher_runtime`: Wall-clock runtime (in seconds) to compute Böttcher score.
61
+ * `synth_sa_score`: Synthetic accessibility score (SAScore)
62
  * `meta_cas_number`: CAS Registry Number, if available.
63
  * `meta_names`: Common names or synonyms for the molecule.
64
  * `meta_iupac_name`: IUPAC name for the molecule.