Movie of t-SNE SED embedding plotted in three dimensions. PPI edges were filtered to show interactions only among proteins that cluster together. The movie was made from Cytoscape using RCytoscape to iteratively rotate and zoom the network nodes, plotted using coordinates derived from t-SNE SED embedding. Nodes and edges are graphed as in Figs 1 and S1.
Palacios-Moreno J, Foltz L, Guo A, Stokes M, Kuehn E, George L, Comb M, Grimes M
CC BY 4.0
<a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4401789/bin/pcbi.1004130.s001.m4v">S1 Movie</a> from <cite style="font-style:normal">Palacios-Moreno J, Foltz L, Guo A, Stokes M, Kuehn E, George L, Comb M, Grimes M (2015). "<a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4401789">Neuroblastoma Tyrosine Kinase Signaling Networks Involve FYN and LYN in Endosomes and Lipid Rafts</a>". <i>PLOS Computational Biology</i>. <a href="https://en.wikipedia.org/wiki/Digital_object_identifier" class="extiw" title="w:Digital object identifier">DOI</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1371/journal.pcbi.1004130">10.1371/journal.pcbi.1004130</a>. <a href="https://en.wikipedia.org/wiki/PMID" class="extiw" title="w:PMID">PMID</a> <a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pubmed/25884760">25884760</a>. <a href="https://en.wikipedia.org/wiki/PubMed_Central" class="extiw" title="w:PubMed Central">PMC</a>: <a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4401789">4401789</a>.</cite>