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README.md
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- [Citation](#citation)
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- [Contact](#contact)
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## Overview
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## Overview
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This dataset contains promoter sequences used for validation purposes in genetic research, focusing on prokaryotic promoters. It serves to facilitate the study of gene expression regulation, providing a comprehensive set of promoter sequences from various organisms.
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A balanced distribution approach was adopted to even out the number of positive and negative samples, with the dataset being systematically divided into training, validation, and test subsets. This stratification underpins a thorough evaluation of the model efficacy.
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*Figure 1: Promoter dataset - overview*
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The prokaryotic promoter sequences are typically 81bp long, ensuring compatibility with most tools' input prerequisites, particularly around the putative TSS region interval $[-60, +20]$. Our positive dataset encompasses promoter sequences from various species, predominantly found on both chromosomes and plasmids. Promoters included in the independent test set, based on exact match, were excluded from the training data. Species and contigs were mapped to NCBI assembly and sequence accessions.
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- [Citation](#citation)
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- [Contact](#contact)
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## Overview
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This dataset contains promoter sequences used for validation purposes in genetic research, focusing on prokaryotic promoters. It serves to facilitate the study of gene expression regulation, providing a comprehensive set of promoter sequences from various organisms.
|
|
|
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| 65 |
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A balanced distribution approach was adopted to even out the number of positive and negative samples, with the dataset being systematically divided into training, validation, and test subsets. This stratification underpins a thorough evaluation of the model efficacy.
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*Figure 1: Promoter dataset - overview*
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The prokaryotic promoter sequences are typically 81bp long, ensuring compatibility with most tools' input prerequisites, particularly around the putative TSS region interval $[-60, +20]$. Our positive dataset encompasses promoter sequences from various species, predominantly found on both chromosomes and plasmids. Promoters included in the independent test set, based on exact match, were excluded from the training data. Species and contigs were mapped to NCBI assembly and sequence accessions.
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