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README.md
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@@ -84,9 +84,104 @@ This is an UNOFFICIAL release of the [RNAcentral](https://rnacentral.org) by The
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**The team releasing RNAcentral did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.**
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## Description
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- **Homepage:** https://rnacentral.org
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- **Documentation:** https://multimolecule.danling.org/datasets/rnacentral
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- **Paper:** [RNAcentral: a hub of information for non-coding RNA sequences](https://doi.org/10.1093/nar/gky1034)
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- **Point of Contact:** [Blake Sweeney](https://www.ebi.ac.uk/people/person/blake-sweeney/)
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**The team releasing RNAcentral did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.**
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## Dataset Description
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- **Homepage:** https://rnacentral.org
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- **Documentation:** https://multimolecule.danling.org/datasets/rnacentral
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- **Paper:** [RNAcentral: a hub of information for non-coding RNA sequences](https://doi.org/10.1093/nar/gky1034)
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- **Point of Contact:** [Blake Sweeney](https://www.ebi.ac.uk/people/person/blake-sweeney/)
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## License
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This dataset is licensed under the [AGPL-3.0 License](https://www.gnu.org/licenses/agpl-3.0.html).
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```spdx
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SPDX-License-Identifier: AGPL-3.0-or-later
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```
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## Citation
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```bibtex
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@article{rnacentral2021,
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author = {{RNAcentral Consortium}},
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doi = {https://doi.org/10.1093/nar/gkaa921},
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journal = {Nucleic Acids Research},
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month = jan,
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number = {D1},
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pages = {D212--D220},
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publisher = {Oxford University Press (OUP)},
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title = {{RNAcentral} 2021: secondary structure integration, improved sequence search and new member databases},
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url = {https://academic.oup.com/nar/article/49/D1/D212/5940500},
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volume = 49,
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year = 2021
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}
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@article{sweeney2020exploring,
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author = {Sweeney, Blake A. and Tagmazian, Arina A. and Ribas, Carlos E. and Finn, Robert D. and Bateman, Alex and Petrov, Anton I.},
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doi = {https://doi.org/10.1002/cpbi.104},
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eprint = {https://currentprotocols.onlinelibrary.wiley.com/doi/pdf/10.1002/cpbi.104},
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journal = {Current Protocols in Bioinformatics},
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keywords = {Galaxy, ncRNA, non-coding RNA, RNAcentral, RNA-seq},
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number = {1},
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pages = {e104},
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title = {Exploring Non-Coding RNAs in RNAcentral},
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url = {https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.104},
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volume = 71,
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year = 2020
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}
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@article{rnacentral2019,
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author = {{The RNAcentral Consortium}},
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doi = {https://doi.org/10.1093/nar/gky1034},
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journal = {Nucleic Acids Research},
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month = jan,
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number = {D1},
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pages = {D221--D229},
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publisher = {Oxford University Press (OUP)},
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title = {{RNAcentral}: a hub of information for non-coding {RNA} sequences},
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url = {https://academic.oup.com/nar/article/47/D1/D221/5160993},
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volume = 47,
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year = 2019
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}
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@article{rnacentral2017,
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author = {{The RNAcentral Consortium} and Petrov, Anton I and Kay, Simon J E and Kalvari, Ioanna and Howe, Kevin L and Gray, Kristian A and Bruford, Elspeth A and Kersey, Paul J and Cochrane, Guy and Finn, Robert D and Bateman, Alex and Kozomara, Ana and Griffiths-Jones, Sam and Frankish, Adam and Zwieb, Christian W and Lau, Britney Y and Williams, Kelly P and Chan, Patricia Pand Lowe, Todd M and Cannone, Jamie J and Gutell, Robin and Machnicka, Magdalena A and Bujnicki, Janusz M and Yoshihama, Maki and Kenmochi, Naoya and Chai, Benli and Cole, James R and Szymanski, Maciej and Karlowski, Wojciech M and Wood, Valerie and Huala, Eva and Berardini, Tanya Z and Zhao, Yi and Chen, Runsheng and Zhu, Weimin and Paraskevopoulou, Maria D and Vlachos, Ioannis S and Hatzigeorgiou, Artemis G and Ma, Lina and Zhang, Zhang and Puetz, Joern and Stadler, Peter F and McDonald, Daniel and Basu, Siddhartha and Fey, Petra and Engel, Stacia R and Cherry, J Michael and Volders, Pieter-Jan and Mestdagh, Pieter and Wower, Jacek and Clark, Michael B and Quek, Xiu Cheng and Dinger, Marcel E},
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doi = {https://doi.org/10.1093/nar/gkw1008},
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journal = {Nucleic Acids Research},
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month = jan,
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number = {D1},
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pages = {D128--D134},
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publisher = {Oxford University Press (OUP)},
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title = {{RNAcentral}: a comprehensive database of non-coding {RNA} sequences},
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url = {https://academic.oup.com/nar/article/45/D1/D128/2333921},
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volume = 45,
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year = 2017
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}
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@article{rnacentral2015,
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author = {{RNAcentral Consortium} and Petrov, Anton I and Kay, Simon J E and Gibson, Richard and Kulesha, Eugene and Staines, Dan and Bruford, Elspeth A and Wright, Mathew W and Burge, Sarah and Finn, Robert D and Kersey, Paul J and Cochrane, Guy and Bateman, Alex and Griffiths-Jones, Sam and Harrow, Jennifer and Chan, Patricia P and Lowe, Todd M and Zwieb, Christian W and Wower, Jacek and Williams, Kelly P and Hudson, Corey M and Gutell, Robin and Clark, Michael B and Dinger, Marcel and Quek, Xiu Cheng and Bujnicki, Janusz M and Chua, Nam-Hai and Liu, Jun and Wang, Huan and Skogerb{\o}, Geir and Zhao, Yi and Chen, Runsheng and Zhu, Weimin and Cole, James R and Chai, Benli and Huang, Hsien-Da and Huang, His-Yuan and Cherry, J Michael and Hatzigeorgiou, Artemis and Pruitt, Kim D},
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doi = {https://doi.org/10.1093/nar/gku991},
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journal = {Nucleic Acids Research},
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month = jan,
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number = {Database issue},
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pages = {D123--D129},
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title = {{RNAcentral}: an international database of {ncRNA} sequences},
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url = {https://academic.oup.com/nar/article/43/D1/D123/2439941},
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volume = 43,
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year = 2015
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}
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@article{bateman2011rnacentral,
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author = {Bateman, Alex and Agrawal, Shipra and Birney, Ewan and Bruford, Elspeth A and Bujnicki, Janusz M and Cochrane, Guy and Cole, James R and Dinger, Marcel E and Enright, Anton J and Gardner, Paul P and Gautheret, Daniel and Griffiths-Jones, Sam and Harrow, Jen and Herrero, Javier and Holmes, Ian H and Huang, Hsien-Da and Kelly, Krystyna A and Kersey, Paul and Kozomara, Ana and Lowe, Todd M and Marz, Manja and Moxon, Simon andPruitt, Kim D and Samuelsson, Tore and Stadler, Peter F and Vilella, Albert J and Vogel, Jan-Hinnerk and Williams, Kelly P and Wright, Mathew W and Zwieb, Christian},
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doi = {https://doi.org/10.1261/rna.2750811},
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journal = {RNA},
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month = nov,
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number = 11,
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pages = {1941--1946},
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publisher = {Cold Spring Harbor Laboratory},
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title = {{RNAcentral}: A vision for an international database of {RNA} sequences},
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url = {https://rnajournal.cshlp.org/content/17/11/1941.long},
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volume = 17,
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year = 2011
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}
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```
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