<P> a Gap penalty is a method of scoring alignments of two or more sequences . When aligning sequences , introducing a gaps in the sequences can allow an alignment algorithm to match more terms than a gap-less alignment can . However , minimizing gaps in an alignment is important to create a useful alignment . Too many gaps can cause an alignment to become meaningless . Gap penalties are used to adjust alignment scores based on the number and length of gaps . The five main types of gap penalties are constant , linear , affine , convex , and Profile - based . </P>
<P> a Gap penalty is a method of scoring alignments of two or more sequences . When aligning sequences , introducing a gaps in the sequences can allow an alignment algorithm to match more terms than a gap-less alignment can . However , minimizing gaps in an alignment is important to create a useful alignment . Too many gaps can cause an alignment to become meaningless . Gap penalties are used to adjust alignment scores based on the number and length of gaps . The five main types of gap penalties are constant , linear , affine , convex , and Profile - based . </P>
how many gaps are there in the gap model
how many gaps are there in the gap model
five
five