1 genome
Browse files- wheat-bees.py +2 -8
wheat-bees.py
CHANGED
@@ -117,19 +117,13 @@ class PlantMultiSpeciesGenomes(datasets.GeneratorBasedBuilder):
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filepaths_txt = dl_manager.download_and_extract('plant_genome_file_names.txt')
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with open(filepaths_txt) as f:
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filepaths = [os.path.join("plant_genomes",filepath.rstrip()) for filepath in f]
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validation_paths = filepaths[-4:-2] # 2 genomes for validation set
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train_paths = filepaths[:-4] # 44 genomes for training
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train_downloaded_files = dl_manager.download_and_extract(train_paths)
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test_downloaded_files = dl_manager.download_and_extract(test_paths)
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validation_downloaded_files = dl_manager.download_and_extract(validation_paths)
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return [
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datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"files": train_downloaded_files, "chunk_length": self.config.chunk_length}),
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datasets.SplitGenerator(name=datasets.Split.VALIDATION, gen_kwargs={"files": validation_downloaded_files, "chunk_length": self.config.chunk_length}),
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datasets.SplitGenerator(name=datasets.Split.TEST, gen_kwargs={"files": test_downloaded_files, "chunk_length": self.config.chunk_length}),
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]
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# method parameters are unpacked from `gen_kwargs` as given in `_split_generators`
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filepaths_txt = dl_manager.download_and_extract('plant_genome_file_names.txt')
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with open(filepaths_txt) as f:
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filepaths = [os.path.join("plant_genomes",filepath.rstrip()) for filepath in f]
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train_paths = filepaths
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train_downloaded_files = dl_manager.download_and_extract(train_paths)
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return [
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datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"files": train_downloaded_files, "chunk_length": self.config.chunk_length}),
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]
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# method parameters are unpacked from `gen_kwargs` as given in `_split_generators`
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