Datasets:
SinaMostafanejad
commited on
Commit
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Parent(s):
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adds details on SEAMM and source files
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README.md
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- [Accessing the Data](#accessing-the-data)
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- [Dataset Creation](#dataset-creation)
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- [Curation Rationale](#curation-rationale)
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- [Initial Data Collection and Normalization](#initial-data-collection-and-normalization)
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- [Personal and Sensitive Information](#personal-and-sensitive-information)
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- [Considerations for Using the Data](#considerations-for-using-the-data)
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The present version of PM7 dataset has been extracted from the
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[pm7.sdf.gz](https://huggingface.co/datasets/molssiai-hub/pm7/blob/main/pm7.sdf.gz)
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file, transformed into a dictionary and stored in the `.json` format.
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#### Initial Data Collection and Normalization
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- [Accessing the Data](#accessing-the-data)
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- [Dataset Creation](#dataset-creation)
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- [Curation Rationale](#curation-rationale)
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- [Source Data](#source-data)
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- [Initial Data Collection and Normalization](#initial-data-collection-and-normalization)
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- [Personal and Sensitive Information](#personal-and-sensitive-information)
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- [Considerations for Using the Data](#considerations-for-using-the-data)
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The present version of PM7 dataset has been extracted from the
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[pm7.sdf.gz](https://huggingface.co/datasets/molssiai-hub/pm7/blob/main/pm7.sdf.gz)
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file, transformed into a dictionary and stored in the `.json` format. The SDF
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file was generated using [Simulation Environment for Atomistic and Molecular
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Modeling (SEAMM)](https://github.com/molssi-seamm) software. The SEAMM flowchart
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for processing the PM7 dataset from the MOPAC input files can be found on
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Zenodo.
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### Source Data
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The PM7 dataset (and the corresponding SDF file) was generated using the MOPAC
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input files hosted in [MOPAC GitHub repository](https://github.com/openmopac/mopac/tree/main/data/normal).
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#### Initial Data Collection and Normalization
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