def test_modify_uns_in_copy():
    # https://github.com/theislab/anndata/issues/571
    adata = ad.AnnData(np.ones((5, 5)), uns={"parent": {"key": "value"}})
    adata_copy = adata[:3].copy()
    adata_copy.uns["parent"]["key"] = "new_value"
    assert adata.uns["parent"]["key"] != adata_copy.uns["parent"]["key"]
def ProcessCommandLineArgs(parser, args):
  # TODO(ariblue): Delete this flag entirely at some future data, when the
  # existence of such a flag has been long forgotten.
  if args.output_file:
    parser.error('This flag is deprecated. Please use --output-dir instead.')

  try:
    os.makedirs(args.output_dir)
  except OSError:
    # Do nothing if the output directory already exists. Existing files will
    # get overwritten.
    pass

  args.output_dir = os.path.expanduser(args.output_dir)