def test_view_of_view_modification():
    adata = ad.AnnData(np.zeros((10, 10)))
    adata[0, :][:, 5:].X = np.ones(5)
    assert np.all(adata.X[0, 5:] == np.ones(5))
    adata[[1, 2], :][:, [1, 2]].X = np.ones((2, 2))
    assert np.all(adata.X[1:3, 1:3] == np.ones((2, 2)))

    adata.X = sparse.csr_matrix(adata.X)
    adata[0, :][:, 5:].X = np.ones(5) * 2
    assert np.all(asarray(adata.X)[0, 5:] == np.ones(5) * 2)
    adata[[1, 2], :][:, [1, 2]].X = np.ones((2, 2)) * 2
    assert np.all(asarray(adata.X)[1:3, 1:3] == np.ones((2, 2)) * 2)
def rename_source(self):
        """This is fairly horrible.
        The github tarfiles have weird names that do not correspond to the
        canonical name. We need to rename these, but leave a symlink for
        spack to work with.
        """
        # Note that this particular OpenFOAM requires absolute directories
        # to build correctly!
        parent   = os.path.dirname(self.stage.source_path)
        original = os.path.basename(self.stage.source_path)
        target   = 'OpenFOAM-{0}'.format(self.version)
        # Could also grep through etc/bashrc for WM_PROJECT_VERSION
        with working_dir(parent):
            if original != target and not os.path.lexists(target):
                os.rename(original, target)
                os.symlink(target, original)
                tty.info('renamed {0} -> {1}'.format(original, target))