def test_set_varm(adata):
    init_hash = joblib.hash(adata)

    dim0_size = np.random.randint(2, adata.shape[1] - 1)
    dim1_size = np.random.randint(1, 99)
    orig_varm_val = adata.varm["o"].copy()
    subset_idx = np.random.choice(adata.var_names, dim0_size, replace=False)

    subset = adata[:, subset_idx]
    assert subset.is_view
    subset.varm = dict(o=np.ones((dim0_size, dim1_size)))
    assert not subset.is_view
    assert np.all(orig_varm_val == adata.varm["o"])  # Checking for mutation
    assert np.all(subset.varm["o"] == np.ones((dim0_size, dim1_size)))

    subset = adata[:, subset_idx]
    subset_hash = joblib.hash(subset)
    with pytest.raises(ValueError):
        subset.varm = dict(o=np.ones((dim0_size + 1, dim1_size)))
    with pytest.raises(ValueError):
        subset.varm = dict(o=np.ones((dim0_size - 1, dim1_size)))
    # subset should not be changed by failed setting
    assert subset_hash == joblib.hash(subset)
    assert init_hash == joblib.hash(adata)
def balanced_accuracy_scoring(clf, X, y):
    """Scoring function that computes the balanced accuracy to be used
    internally in the cross-validation procedure.
    """
    y_pred = clf.predict(X)
    conf_mat = confusion_matrix(y, y_pred)
    bal_acc = 0.
    for i in range(len(conf_mat)):
        bal_acc += (float(conf_mat[i, i])) / np.sum(conf_mat[i])

    bal_acc /= len(conf_mat)
    return bal_acc