def test_deepcopy_subset(adata, spmat: type):
    adata.obsp["arr"] = np.zeros((adata.n_obs, adata.n_obs))
    adata.obsp["spmat"] = spmat((adata.n_obs, adata.n_obs))

    adata = deepcopy(adata[:10].copy())

    assert isinstance(adata.obsp["arr"], np.ndarray)
    assert not isinstance(adata.obsp["arr"], ArrayView)
    np.testing.assert_array_equal(adata.obsp["arr"].shape, (10, 10))

    assert isinstance(adata.obsp["spmat"], spmat)
    assert not isinstance(
        adata.obsp["spmat"],
        SparseCSRView if spmat is sparse.csr_matrix else SparseCSCView,
    )
    np.testing.assert_array_equal(adata.obsp["spmat"].shape, (10, 10))
def compute_rbf_kernel_matrix(X):
    """Compute the RBF kernel matrix with sigma2 as the median pairwise
    distance.
    """
    sigma2 = np.median(pairwise_distances(X, metric='euclidean'))**2
    K = pairwise_kernels(X, X, metric='rbf', gamma=1.0/sigma2, n_jobs=-1)
    return K