def test_view_retains_ndarray_subclass():
    adata = ad.AnnData(np.zeros((10, 10)))
    adata.obsm["foo"] = np.zeros((10, 5)).view(NDArraySubclass)

    view = adata[:5, :]

    assert isinstance(view.obsm["foo"], NDArraySubclass)
    assert view.obsm["foo"].shape == (5, 5)
def compute_rbf_kernel_matrix(X):
    """Compute the RBF kernel matrix with sigma2 as the median pairwise
    distance.
    """
    sigma2 = np.median(pairwise_distances(X, metric='euclidean'))**2
    K = pairwise_kernels(X, X, metric='rbf', gamma=1.0/sigma2, n_jobs=-1)
    return K