def test_view_of_view(matrix_type, subset_func, subset_func2):
    adata = gen_adata((30, 15), X_type=matrix_type)
    adata.raw = adata
    if subset_func is single_subset:
        pytest.xfail("Other subset generating functions have trouble with this")
    var_s1 = subset_func(adata.var_names, min_size=4)
    var_view1 = adata[:, var_s1]
    var_s2 = subset_func2(var_view1.var_names)
    var_view2 = var_view1[:, var_s2]
    assert var_view2._adata_ref is adata
    obs_s1 = subset_func(adata.obs_names, min_size=4)
    obs_view1 = adata[obs_s1, :]
    obs_s2 = subset_func2(obs_view1.obs_names)
    assert adata[obs_s1, :][:, var_s1][obs_s2, :]._adata_ref is adata

    view_of_actual_copy = adata[:, var_s1].copy()[obs_s1, :].copy()[:, var_s2].copy()

    view_of_view_copy = adata[:, var_s1][obs_s1, :][:, var_s2].copy()

    assert_equal(view_of_actual_copy, view_of_view_copy, exact=True)
def fetch_new(self, dest, url, rev_options):
        # type: (str, HiddenText, RevOptions) -> None
        rev_display = rev_options.to_display()
        logger.info('Cloning %s%s to %s', url, rev_display, display_path(dest))
        self.run_command(make_command('clone', '-q', url, dest))

        if rev_options.rev:
            # Then a specific revision was requested.
            rev_options = self.resolve_revision(dest, url, rev_options)
            branch_name = getattr(rev_options, 'branch_name', None)
            if branch_name is None:
                # Only do a checkout if the current commit id doesn't match
                # the requested revision.
                if not self.is_commit_id_equal(dest, rev_options.rev):
                    cmd_args = make_command(
                        'checkout', '-q', rev_options.to_args(),
                    )
                    self.run_command(cmd_args, cwd=dest)
            elif self.get_current_branch(dest) != branch_name:
                # Then a specific branch was requested, and that branch
                # is not yet checked out.
                track_branch = 'origin/{}'.format(branch_name)
                cmd_args = [
                    'checkout', '-b', branch_name, '--track', track_branch,
                ]
                self.run_command(cmd_args, cwd=dest)

        #: repo may contain submodules
        self.update_submodules(dest)