def test_deepcopy_subset(adata, spmat: type):
    adata.obsp["arr"] = np.zeros((adata.n_obs, adata.n_obs))
    adata.obsp["spmat"] = spmat((adata.n_obs, adata.n_obs))

    adata = deepcopy(adata[:10].copy())

    assert isinstance(adata.obsp["arr"], np.ndarray)
    assert not isinstance(adata.obsp["arr"], ArrayView)
    np.testing.assert_array_equal(adata.obsp["arr"].shape, (10, 10))

    assert isinstance(adata.obsp["spmat"], spmat)
    assert not isinstance(
        adata.obsp["spmat"],
        SparseCSRView if spmat is sparse.csr_matrix else SparseCSCView,
    )
    np.testing.assert_array_equal(adata.obsp["spmat"].shape, (10, 10))
def update(self, dest, url, rev_options):
        # type: (str, HiddenText, RevOptions) -> None
        # First fetch changes from the default remote
        if self.get_git_version() >= parse_version('1.9.0'):
            # fetch tags in addition to everything else
            self.run_command(['fetch', '-q', '--tags'], cwd=dest)
        else:
            self.run_command(['fetch', '-q'], cwd=dest)
        # Then reset to wanted revision (maybe even origin/master)
        rev_options = self.resolve_revision(dest, url, rev_options)
        cmd_args = make_command('reset', '--hard', '-q', rev_options.to_args())
        self.run_command(cmd_args, cwd=dest)
        #: update submodules
        self.update_submodules(dest)