def __init__(self, manager, task_id, sub_ids=None, dry_run=False, resubmit=False):
		self.__manager = manager
		self.__task	= self.__manager.load_task(task_id)
		self.__sub_ids = sub_ids
		self.__dry_run = dry_run
		self.__resubmit = resubmit

		self.__logger = logging.getLogger('JSUB')
		if self.__sub_ids==None:
			self.__sub_ids=range(len(self.__task.data['jobvar']))

		self.__initialize_manager()
def setup_run_environment(self, env):
        bashrc = self.prefix.etc.bashrc
        try:
            env.extend(EnvironmentModifications.from_sourcing_file(
                bashrc, clean=True
            ))
        except Exception as e:
            msg = 'unexpected error when sourcing OpenFOAM bashrc [{0}]'
            tty.warn(msg.format(str(e)))