def test_set_obs(adata, subset_func):
    init_hash = joblib.hash(adata)

    subset = adata[subset_func(adata.obs_names), :]

    new_obs = pd.DataFrame(
        dict(a=np.ones(subset.n_obs), b=np.ones(subset.n_obs)),
        index=subset.obs_names,
    )

    assert subset.is_view
    subset.obs = new_obs
    assert not subset.is_view
    assert np.all(subset.obs == new_obs)

    assert joblib.hash(adata) == init_hash
def __calculate_initial_covariances(self, initial_clusters):
        covariances = []
        for initial_cluster in initial_clusters:
            if len(initial_cluster) > 1:
                cluster_sample = [self.__sample[index_point] for index_point in initial_cluster]
                covariances.append(numpy.cov(cluster_sample, rowvar=False))
            else:
                dimension = len(self.__sample[0])
                covariances.append(numpy.zeros((dimension, dimension)) + random.random() / 10.0)