def test_double_index(subset_func, subset_func2):
    adata = gen_adata((10, 10))
    obs_subset = subset_func(adata.obs_names)
    var_subset = subset_func2(adata.var_names)
    v1 = adata[obs_subset, var_subset]
    v2 = adata[obs_subset, :][:, var_subset]

    assert np.all(asarray(v1.X) == asarray(v2.X))
    assert np.all(v1.obs == v2.obs)
    assert np.all(v1.var == v2.var)
def flush_to_index(self) -> None:
        """Flush changes in our configuration file to the index"""
        assert self._smref is not None
        # should always have a file here
        assert not isinstance(self._file_or_files, BytesIO)

        sm = self._smref()
        if sm is not None:
            index = self._index
            if index is None:
                index = sm.repo.index
            # END handle index
            index.add([sm.k_modules_file], write=self._auto_write)
            sm._clear_cache()
        # END handle weakref