def test_view_of_view_modification():
    adata = ad.AnnData(np.zeros((10, 10)))
    adata[0, :][:, 5:].X = np.ones(5)
    assert np.all(adata.X[0, 5:] == np.ones(5))
    adata[[1, 2], :][:, [1, 2]].X = np.ones((2, 2))
    assert np.all(adata.X[1:3, 1:3] == np.ones((2, 2)))

    adata.X = sparse.csr_matrix(adata.X)
    adata[0, :][:, 5:].X = np.ones(5) * 2
    assert np.all(asarray(adata.X)[0, 5:] == np.ones(5) * 2)
    adata[[1, 2], :][:, [1, 2]].X = np.ones((2, 2)) * 2
    assert np.all(asarray(adata.X)[1:3, 1:3] == np.ones((2, 2)) * 2)
def get_repository_root(cls, location):
        loc = super(Git, cls).get_repository_root(location)
        if loc:
            return loc
        try:
            r = cls.run_command(
                ['rev-parse', '--show-toplevel'],
                cwd=location,
                show_stdout=False,
                stdout_only=True,
                on_returncode='raise',
                log_failed_cmd=False,
            )
        except BadCommand:
            logger.debug("could not determine if %s is under git control "
                         "because git is not available", location)
            return None
        except InstallationError:
            return None
        return os.path.normpath(r.rstrip('\r\n'))