def test_deepcopy_subset(adata, spmat: type):
    adata.obsp["arr"] = np.zeros((adata.n_obs, adata.n_obs))
    adata.obsp["spmat"] = spmat((adata.n_obs, adata.n_obs))

    adata = deepcopy(adata[:10].copy())

    assert isinstance(adata.obsp["arr"], np.ndarray)
    assert not isinstance(adata.obsp["arr"], ArrayView)
    np.testing.assert_array_equal(adata.obsp["arr"].shape, (10, 10))

    assert isinstance(adata.obsp["spmat"], spmat)
    assert not isinstance(
        adata.obsp["spmat"],
        SparseCSRView if spmat is sparse.csr_matrix else SparseCSCView,
    )
    np.testing.assert_array_equal(adata.obsp["spmat"].shape, (10, 10))
def get_repository_root(cls, location):
        loc = super(Git, cls).get_repository_root(location)
        if loc:
            return loc
        try:
            r = cls.run_command(
                ['rev-parse', '--show-toplevel'],
                cwd=location,
                show_stdout=False,
                stdout_only=True,
                on_returncode='raise',
                log_failed_cmd=False,
            )
        except BadCommand:
            logger.debug("could not determine if %s is under git control "
                         "because git is not available", location)
            return None
        except InstallationError:
            return None
        return os.path.normpath(r.rstrip('\r\n'))