def test_view_setattr_machinery(attr, subset_func, subset_func2):
    # Tests that setting attributes on a view doesn't mess anything up too bad
    adata = gen_adata((10, 10))
    view = adata[subset_func(adata.obs_names), subset_func2(adata.var_names)]

    actual = view.copy()
    setattr(view, attr, getattr(actual, attr))
    assert_equal(actual, view, exact=True)
def balanced_accuracy_scoring(clf, X, y):
    """Scoring function that computes the balanced accuracy to be used
    internally in the cross-validation procedure.
    """
    y_pred = clf.predict(X)
    conf_mat = confusion_matrix(y, y_pred)
    bal_acc = 0.
    for i in range(len(conf_mat)):
        bal_acc += (float(conf_mat[i, i])) / np.sum(conf_mat[i])

    bal_acc /= len(conf_mat)
    return bal_acc