| // Copyright (C) 2016 University of Dundee & Open Microscopy Environment.// All rights reserved.// This program is free software: you can redistribute it and/or modify// it under the terms of the GNU Affero General Public License as// published by the Free Software Foundation, either version 3 of the// License, or (at your option) any later version.// This program is distributed in the hope that it will be useful,// but WITHOUT ANY WARRANTY; without even the implied warranty of// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the// GNU Affero General Public License for more details.// You should have received a copy of the GNU Affero General Public License// along with this program. If not, see <http://www.gnu.org/licenses/>.var FileAnnsPane = function FileAnnsPane($element, opts) { var $header = $element.children('h1'), $body = $element.children('div'), $fileanns_container = $("#fileanns_container"), objects = opts.selected; var self = this; var tmplText = $('#fileanns_template').html(); var filesTempl = _.template(tmplText); var initEvents = (function initEvents() { $header.on('click', function(){ $header.toggleClass('closed'); $body.slideToggle(); var expanded = !$header.hasClass('closed'); OME.setPaneExpanded('files', expanded); if (expanded && $fileanns_container.is(":empty")) { this.render(); } }.bind(this)); }).bind(this); // set-up the attachment selection form to use AJAX. (requires jquery.form.js plugin) if ($("#choose_attachments_form").length === 0) { $("<form id='choose_attachments_form' title='Choose attachments' " + "action='" + WEBCLIENT.URLS.webindex + "annotate_file/' method='post'></form>") .hide().appendTo('body'); } $('#choose_attachments_form').ajaxForm({ beforeSubmit: function(data) { $("#batch_attachments_form").dialog( "close" ); $("#fileann_spinner").show(); }, success: function() { $("#fileann_spinner").hide(); // update the list of file annotations and bind actions self.render(); }, error: function(data){ $("#fileann_spinner").hide(); alert("Upload failed [" + data.status + " " + data.statusText + "]"); } }); // prepare dialog for choosing file to attach... $("#choose_attachments_form").dialog({ autoOpen: false, resizable: false, height: 420, width:360, modal: true, buttons: { "Accept": function() { // simply submit the form (AJAX handling set-up above) $("#choose_attachments_form").trigger('submit'); $( this ).dialog( "close" ); }, "Cancel": function() { $( this ).dialog( "close" ); } } }); // show dialog for choosing file to attach... $("#choose_file_anns").on('click', function() { // show dialog first, then do the AJAX call to load files... var $attach_form = $( "#choose_attachments_form" ); $attach_form.dialog( "open" ); // load form via AJAX... var load_url = $(this).attr('href'); $attach_form.html(" <br><img src='" + WEBCLIENT.URLS.static_webgateway + "img/spinner.gif' /> Loading attachments"); $attach_form.load(load_url); return false; }); // Show/hide checkboxes beside files to select files for scripts $(".toolbar input[type=button]", $body).on('click', OME.toggleFileAnnotationCheckboxes ); $("#fileanns_container").on( "change", "li input[type=checkbox]", OME.fileAnnotationCheckboxChanged ); $("#fileanns_container").on("click", ".removeFile", function(event) { var url = $(this).attr('href'), parents = objects.join("|"); // E.g image-123|image-456 OME.removeItem(event, ".file_ann_wrapper", url, parents); return false; }); // delete action (files) $("#fileanns_container").on("click", ".deleteFile", function(event) { var url = $(this).attr('href'); OME.deleteItem(event, "file_ann_wrapper", url); }); var isNotCompanionFile = function isNotCompanionFile(ann) { return ann.ns !== OMERO.constants.namespaces.NSCOMPANIONFILE; }; var compareParentName = function(a, b){ if (!a.parent.name || !b.parent.name) { return 1; } return a.parent.name.toLowerCase() > b.parent.name.toLowerCase() ? 1 : -1; }; this.render = function render() { if ($fileanns_container.is(":visible")) { if ($fileanns_container.is(":empty")) { $fileanns_container.html("Loading attachments..."); } var request = objects.map(function(o){ return o.replace("-", "="); }); request = request.join("&"); $.getJSON(WEBCLIENT.URLS.webindex + "api/annotations/?type=file&" + request, function(data){ var checkboxesAreVisible = $( "#fileanns_container input[type=checkbox]:visible" ).length > 0; // manipulate data... // make an object of eid: experimenter var experimenters = data.experimenters.reduce(function(prev, exp){ prev[exp.id + ""] = exp; return prev; }, {}); // Populate experimenters within anns var anns = data.annotations.map(function(ann){ ann.owner = experimenters[ann.owner.id]; if (ann.link && ann.link.owner) { ann.link.owner = experimenters[ann.link.owner.id]; } // AddedBy IDs for filtering ann.addedBy = [ann.link.owner.id]; // BUG: CWE-79 Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting') // ann.description = _.escape(ann.description); // FIXED: ann.file.size = ann.file.size !== null ? ann.file.size.filesizeformat() : ""; return ann; }); // Don't show companion files anns = anns.filter(isNotCompanionFile); // If we are batch annotating multiple objects, we show a summary of each tag if (objects.length > 1) { // Map tag.id to summary for that tag var summary = {}; anns.forEach(function(ann){ var annId = ann.id, linkOwner = ann.link.owner.id; if (summary[annId] === undefined) { ann.canRemove = false; ann.canRemoveCount = 0; ann.links = []; ann.addedBy = []; summary[annId] = ann; } // Add link to list... var l = ann.link; // slice parent class 'ProjectI' > 'Project' l.parent.class = l.parent.class.slice(0, -1); summary[annId].links.push(l); // ...and summarise other properties on the ann if (l.permissions.canDelete) { summary[annId].canRemoveCount += 1; } summary[annId].canRemove = summary[annId].canRemove || l.permissions.canDelete; if (summary[annId].addedBy.indexOf(linkOwner) === -1) { summary[annId].addedBy.push(linkOwner); } }); // convert summary back to list of 'anns' anns = []; for (var annId in summary) { if (summary.hasOwnProperty(annId)) { summary[annId].links.sort(compareParentName); anns.push(summary[annId]); } } } // Update html... var html = ""; if (anns.length > 0) { html = filesTempl({'anns': anns, 'webindex': WEBCLIENT.URLS.webindex, 'userId': WEBCLIENT.USER.id}); } $fileanns_container.html(html); // Finish up... OME.filterAnnotationsAddedBy(); if (checkboxesAreVisible) { $("#fileanns_container input[type=checkbox]:not(:visible)").toggle(); } $(".tooltip", $fileanns_container).tooltip_init(); }); } }; initEvents(); if (OME.getPaneExpanded('files')) { $header.toggleClass('closed'); $body.show(); } this.render();}; |