anchor.diff:  	liburi-encode-perl \
   	libunicode-escape-perl \
   	libwww-perl \
  +	make 		\
   	python-biopython \
   	python-dev \
   	python-pip \ 					
  
positive.code: 	&& mv train bin/. \
  	&& mv *.pl bin/. \
  	&& install -s -m555 FragGeneScan bin/. \
  	&& cd .. \
  	&& echo "export PATH=/root/FragGeneScan/bin:\$PATH" >> /root/mgrast_env.sh
  
  
negative.code: ### install DIAMOND
  RUN cd /root \
  	&& git clone https://github.com/bbuchfink/diamond.git \
  	&& mkdir -p /root/diamond \
  	&& cd /root/diamond \
  	# && cat build_simple.sh | sed s/-static//g > build_simple.sh \
  	&& sh ./build_simple.sh \
  	&& install -s -m555 diamond /usr/local/bin \
  	&& rm -rf /root/diamond
  	
  ### install vsearch 2.02
  RUN cd /root \
  	&& wget https://github.com/torognes/vsearch/archive/v2.0.2.tar.gz \
  	&& tar xzf v2.0.2.tar.gz \
  	&& cd vsearch-2.0.2 \
  	&& ./autogen.sh \
  	&& ./configure --prefix=/usr/local/ \
  	&& make \
  	&& make install \
  	&& make clean \
  	&& rm -rf /root/vsearch-2.02/*
  