anchor.diff:        cp /tmp/downloads/fasta/bin/ssearch36 $OPT/bin/. && \
         rm -rf /tmp/downloads/fasta
   
  +#
  +### END of CGP INSTALL ###
  +
  +COPY ./src					/home/seqware/Seqware-CGP-SomaticCore/src
  +COPY ./workflow				/home/seqware/Seqware-CGP-SomaticCore/workflow
  +COPY ./scripts				/home/seqware/Seqware-CGP-SomaticCore/scripts
  +COPY ./pom.xml				/home/seqware/Seqware-CGP-SomaticCore/pom.xml
  +COPY ./workflow.properties	/home/seqware/Seqware-CGP-SomaticCore/workflow.properties
  +
  +RUN chown -R seqware /home/seqware/Seqware-CGP-SomaticCore
  +
   USER seqware
   
   WORKDIR /home/seqware/Seqware-CGP-SomaticCore
  
positive.code: 
  RUN     apt-get -yqq update && \
          apt-get -yqq install build-essential autoconf software-properties-common python-software-properties \
            wget curl zlib1g-dev libncurses5-dev libgd-dev \
            libgd2-xpm-dev libexpat1-dev python unzip libboost-dev libboost-iostreams-dev \
            libpstreams-dev libglib2.0-dev libreadline6-dev gfortran libcairo2-dev openjdk-7-jdk\
            cpanminus && \
  
negative.code:     apt-get install -y apt-utils tar git curl wget dialog net-tools build-essential time tabix && \
      apt-get clean
  
  ### START of CGP INSTALL ###
  #
  ENV OPT /opt/wtsi-cgp
  ENV PATH $OPT/bin:$PATH
  ENV PERL5LIB $OPT/lib/perl5
  