anchor.diff:  
   # Copy nvBowtie and nvBWT executables to /usr/local/bin/
   
  -COPY /home/anton/nvbio/build/nvBowtie/nvBowtie/ /usr/local/bin/
  -COPY /home/anton/nvbio/build/nvBWT/nvBWT/ /usr/local/bin/
  +COPY nvBowtie /usr/local/bin/
  +COPY nvBWT /usr/local/bin/
   
   
   # Get SRA Tooklit from NCBI
   
   RUN wget https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.8.2-1/sratoolkit.2.8.2-1-ubuntu64.tar.gz && \
  -		tar -zxf sratoolkit.2.8.1-2-ubuntu64.tar.gz && \
  -		rm sratoolkit.2.8.1-2-ubuntu64.tar.gz
  -ENV PATH $PATH:/sratoolkit.2.8.1-2-ubuntu64/bin
  +		tar -zxf sratoolkit.2.8.2-1-ubuntu64.tar.gz && \
  +		rm sratoolkit.2.8.2-1-ubuntu64.tar.gz
  +ENV PATH ${PATH}:/sratoolkit.2.8.2-1-ubuntu64/bin
   
   
   # Get HaSAPPy from github --------------!!-- NEED TO ADD RefSeq_human_GRCh38-hg38.txt to /HaSAPPy/docs/
   
   RUN cd / && \
   		git clone https://github.com/gdiminin/HaSAPPy.git && \
  -		HaSAPPy/program && \
  +		cd /HaSAPPy/program && \
   		chmod +x PreprocessReads
   
   # Generate annotation databases
  -RUN python GeneReference_built.py -i /HaSAPPy/docs/mm10_REFSEQgenes.txt -o /HaSAPPy/docs/GeneReference_Mouse-MM10.pkl
  -RUN python GeneReference_built.py -i  /HaSAPPy/docs/RefSeq_human_GRCh38-hg38.txt -o /HaSAPPy/docs/GeneReference_Homo.pkl
  +RUN python /HaSAPPy/program/GeneReference_built.py -i /HaSAPPy/docs/mm10_REFSEQgenes.txt -o /HaSAPPy/docs/GeneReference_Mouse-MM10.pkl
  +# --- !!--- RUN python /HaSAPPy/program/GeneReference_built.py -i  /HaSAPPy/docs/RefSeq_human_GRCh38-hg38.txt -o /HaSAPPy/docs/GeneReference_Homo.pkl
   
   
   # --------------- INIT -------------------------------
  
positive.code: RUN wget ftp://igenome:G3nom3s4u@ussd-ftp.illumina.com/Mus_musculus/UCSC/mm10/Mus_musculus_UCSC_mm10.tar.gz && \
  		tar -xzf Mus_musculus_UCSC_mm10.tar.gz && \
  		rm Mus_musculus_UCSC_mm10.tar.gz
  RUN ftp://igenome:G3nom3s4u@ussd-ftp.illumina.com/Homo_sapiens/UCSC/hg38/Homo_sapiens_UCSC_hg38.tar.gz && \
  		tar -xzf Homo_sapiens_UCSC_hg38.tar.gz && \
  		rm Homo_sapiens_UCSC_hg38.tar.gz
  
  
negative.code: LABEL source "HaSAPPy"
  
  # For nvidia-docker use:
  #		FROM nvidia/cuda:6.5-runtime-ubuntu14.04
  
  RUN apt-get update && apt-get install -y --no-install-recommends \
  		ubuntu-desktop \
  