anchor.diff:      common=/root/knetminer/common
   WORKDIR /root
   
  -RUN apk add --no-cache maven nodejs-npm git \
  +RUN set -x \
  + && apk add --no-cache maven nodejs-npm git \
    && npm install bower gulp -g \
    && echo '{"allow_root":true}' > /root/.bowerrc \
    && git clone https://github.com/Rothamsted/knetminer.git \
    && cd knetminer \
    && git checkout ${git_branch} \
  + && mkdir -p ${cl}/data ${cl}/image \
    && wget -O /root/data.oxl ${oxl_file} \
    && wget -O ${ds}/resources/SemanticMotifs.txt ${semantic_motifs_file} \
    && wget -O ${cl}/data/basemap.xml ${basemap_file} \
  
positive.code:  && wget -O ${cl}/image/background.jpg ${background_image_file} \
   && wget -O ${cl}/image/organism.png ${organism_image_file} \
   && mv ${ds}/resources/config.xml.template ${ds}/resources/config.xml \
   && mv ${ds}/java/rres/knetminer/datasource/provider/Quickstart.java.template ${ds}/java/rres/knetminer/datasource/provider/Quickstart.java  \
   && mv ${cl}/release.html.template ${cl}/release.html \
   && mv ${cl}/index.jsp.template ${cl}/index.jsp \
   && mv ${cl}/javascript/utils-config.js.template ${cl}/javascript/utils-config.js \
  
negative.code:  && sed -e "s/!!LINKNAME!!/${species_link_name}/g" -i'' ${cl}/javascript/utils-config.js \
   && sed -e "s/!!SPECIES!!/${species_name}/g" -i'' ${cl}/release.html \
   && sed -e "s/!!SHORTNAME!!/${species_short_name}/g" -i'' ${cl}/index.jsp \
   && sed -e "s/!!CHROMOSOMES!!/${chromosomes}/g" -i'' ${cl}/index.jsp \
   && sed -e "s/!!KEYWORDS!!/${keywords}/g" -i'' ${cl}/index.jsp \
   && sed -e "s/!!EGKEYWORDS!!/${eg_keywords}/g" -i'' ${cl}/index.jsp \
   && sed -e "s/!!REFGENOME!!/${reference_genome}/g" -i'' ${ds}/resources/config.xml \
   && sed -e "s/!!TAXID!!/${tax_id}/g" -i'' ${ds}/resources/config.xml \
   && sed -e "s/!!LINKNAME!!/${species_link_name}/g" -i'' ${ds}/java/rres/knetminer/datasource/provider/Quickstart.java \
   && mvn install \
   && cd ${common} \
  