anchor.diff:  ENV DATA /usr/local/data
   RUN mkdir $DATA
   
  +## perl lib installations
  +RUN cpanm install Set::IntervalTree \
  +    DB_File \
  +    URI::Escape\
  +    Carp::Assert\
  +    JSON::XS.pm
   
  -## perl lib installations
  -
  -RUN cpanm install Set::IntervalTree  # now included w/ STAR-Fusion
  -RUN cpanm install DB_File
  -RUN cpanm install URI::Escape
  -RUN cpanm install Carp::Assert
  -RUN cpanm install JSON::XS.pm
  -
  -######################
  -## Tool installations:
  -######################
  -
  -
  -
  -########
   # GMAP
   
   RUN GMAP_URL="http://research-pub.gene.com/gmap/src/gmap-gsnap-2017-01-14.tar.gz" && \
  
positive.code:     build-essential\
      libncurses5-dev \
      default-jdk \
      gawk \
      gcc \
      g++ \
      bzip2 \
      cmake \
      automake \
      gzip \
      zip \
      unzip \
      zlib1g-dev \
      zlib1g \
      wget \
  
negative.code:     tar xvf gmap-gsnap-2017-01-14.tar.gz && \
      cd gmap-2017-01-14 && ./configure && make && make install
  
  ENV PERL5LIB ${STAR_FUSION_HOME}/PerlLib
  
  
  ## STAR-Fusion:
  
  ENV STAR_FUSION_VERSION=1.1.0
  