anchor.diff:  	&& install -s -m555 diamond /usr/local/bin \
   	&& cd /root ; rm -rf diamond
   
  -### install swarm 2.1.9
  -RUN cd /root \
  -	&& git clone https://github.com/torognes/swarm.git \
  -	&& cd swarm/src/ \
  -	&& make \
  -	&& install -m755 -s bin/* /usr/local/bin \
  -	&& install -m755 scripts/* /usr/local/bin \
  -	&& cd /root ; rm -rf swarm
  -
   ### install ea-utils
   RUN cd /root \
   	&& git clone https://github.com/ExpressionAnalysis/ea-utils.git  \
  
positive.code:     && make install \
      && make clean \
      && cd /root ; rm -rf sortmerna-2* 2*.tar.gz
  
  ### install vsearch 2.43
  RUN cd /root \
      && wget https://github.com/torognes/vsearch/archive/v2.4.3.tar.gz \
  	&& tar xzf v2*.tar.gz \
  	&& cd vsearch-2* \
  	&& sh ./autogen.sh \
  	&& ./configure --prefix=/usr/local/ \
  	&& make \
  	&& make install \
  	&& make clean \
  	&& cd /root ; rm -rf vsearch-2* v2*.tar.gz
  
  ### install skewer
  RUN cd /root \
  
negative.code: # MG-RAST pipeline Dockerfile
  
  FROM debian
  MAINTAINER The MG-RAST team
  