anchor.diff:      git \
       wget \
       libncurses5-dev \
  +    libbz2-dev \
  +    liblzma-dev \
  +    pkg-config \
  +    automake \
  +    autoconf \
  +    glib-2.0-dev \
       unzip
   
   RUN pip install cython
   RUN pip install pysam
   
   RUN mkdir $HOME/bin
  -RUN export PATH=$PATH:$HOME/bin
   
   RUN wget https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz
   RUN tar xvzf velvet_1.2.10.tgz
  
positive.code: RUN unzip picard-tools-1.131.zip
  
  RUN git clone https://github.com/adamewing/exonerate.git
  RUN cd exonerate
  RUN ./configure && make && make install
  
  RUN git clone https://github.com/adamewing/bamsurgeon.git
  RUN cd bamsurgeon
  RUN python setup.py install
  
negative.code: FROM ubuntu:14.04
  MAINTAINER Adam Ewing <adam.ewing@gmail.com>
  
  ENV PATH=$PATH:$HOME/bin
  
  WORKDIR ~/
  RUN apt-get update && apt-get install -y software-properties-common
  