anchor.diff:  VOLUME /workspace
   WORKDIR /workspace
   
  -COPY examples/using_paxtoolsr.ipynb /workspace/using_paxtoolsr.ipynb
  -COPY examples/using_rcellminer.ipynb /workspace/using_rcellminer.ipynb
  -COPY examples/cgdsr.ipynb /workspace/cgdsr.ipynb
  -
   # https://github.com/ipython/ipython/issues/7062
   CMD sh -c "ipython notebook --ip=*"
  
positive.code: # RUN apt-get update && apt-get install -y texlive-latex-extra   # required for adjustbox.sty, probably is an easier way
  
  # Install basic commands
  RUN apt-get -y install links nano wget git
  
  # Install new version of R
  RUN sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
  
negative.code: # Install R packages
  RUN R -e "install.packages(c('devtools', 'gplots', 'httr', 'igraph', 'knitr', 'methods', 'plyr', 'RColorBrewer', 'rJava', 'rjson', 'R.methodsS3', 'R.oo', 'sqldf', 'stringr', 'testthat', 'XML', 'DT', 'htmlwidgets'), repos='http://cran.rstudio.com/')"
  
  # Install Bioconductor
  RUN R -e "source('http://bioconductor.org/biocLite.R'); biocLite(c('Biobase', 'BiocCheck', 'BiocGenerics', 'BiocStyle', 'S4Vectors', 'IRanges', 'AnnotationDbi'))"
  
  ##### INSTALL IPYRMD
  
  