anchor.diff:  MAINTAINER Yun-Fang Juan yunfang@chanzuckerberg.com
   
   # Add packages, update image, and clear cache
  -RUN apt-get update && apt-get install -y build-essential curl wget python-pip python-dev python-scipy python-redis gdebi-core zip unzip g++ zlib1g-dev gcc pkg-config apt-utils make perl
  +RUN apt-get update && apt-get install -y build-essential curl wget python-pip python-dev python-scipy python-redis gdebi-core zip unzip g++ zlib1g-dev gcc pkg-config apt-utils make perl cmake libbz2-dev
   
   RUN pip install --upgrade pip
   RUN pip install htseq==0.6.1p1
  
positive.code: RUN tar -jxf samtools-1.5.tar.bz2
  WORKDIR /tmp/samtools-1.5
  RUN ./configure --disable-lzma
  RUN make
  RUN mv samtools /usr/local/bin/
  
  WORKDIR /tmp
  
negative.code: RUN apt-get install -y bsdtar
  
  # For de-novo assembly
  WORKDIR /tmp/spades_build
  RUN git clone https://github.com/ablab/spades.git
  WORKDIR /tmp/spades_build/spades
  RUN git checkout spades_3.11.0
  WORKDIR /tmp/spades_build/spades/assembler
  RUN PREFIX=/usr/local ./spades_compile.sh
  RUN /usr/local/bin/spades.py --test
  
  
  WORKDIR /tmp
  # Compile and install gmap/gsnap
  