anchor.diff:      apt-get install -y apt-utils tar git curl wget dialog net-tools build-essential time tabix && \
       apt-get clean
   
  -COPY ./src					/home/seqware/Seqware-CGP-SomaticCore/src
  -COPY ./workflow				/home/seqware/Seqware-CGP-SomaticCore/workflow
  -COPY ./scripts				/home/seqware/Seqware-CGP-SomaticCore/scripts
  -COPY ./pom.xml				/home/seqware/Seqware-CGP-SomaticCore/pom.xml
  -COPY ./workflow.properties	/home/seqware/Seqware-CGP-SomaticCore/workflow.properties
  -
  -RUN chown -R seqware /home/seqware/Seqware-CGP-SomaticCore
  -
  -# CGP build to layer on:
  +### START of CGP INSTALL ###
  +#
   ENV OPT /opt/wtsi-cgp
   ENV PATH $OPT/bin:$PATH
   ENV PERL5LIB $OPT/lib/perl5
  
positive.code:       cp /tmp/downloads/fasta/bin/ssearch36 $OPT/bin/. && \
        rm -rf /tmp/downloads/fasta
  
  USER seqware
  
  WORKDIR /home/seqware/Seqware-CGP-SomaticCore
  
negative.code: 
  RUN     apt-get -yqq update && \
          apt-get -yqq install build-essential autoconf software-properties-common python-software-properties \
            wget curl zlib1g-dev libncurses5-dev \
            libgd2-xpm-dev libexpat1-dev python unzip libboost-dev libboost-iostreams-dev \
            libpstreams-dev libglib2.0-dev libreadline6-dev gfortran libcairo2-dev openjdk-7-jdk\
            cpanminus && \
  