anchor.diff: -FROM nvidia/cuda:9.0-devel
  +FROM nvidia/cuda:10.0-devel
   MAINTAINER Ben Shealy <btsheal@clemson.edu>
   
   # install package dependencies
   RUN apt-get update -qq \
   	&& apt-get install -qq -y \
  -		wget xz-utils \
  -		build-essential pkg-config libgl1-mesa-dev \
  +		qt5-default \
   		clinfo git libgsl-dev liblapacke-dev libopenblas-dev libopenmpi-dev ocl-icd-opencl-dev \
   		python3-pip
   
   # add NVIDIA platform to OpenCL
   RUN mkdir -p /etc/OpenCL/vendors \
   	&& echo "libnvidia-opencl.so.1" > /etc/OpenCL/vendors/nvidia.icd
  -
  -# install Qt
  -WORKDIR /opt
  -
  -ENV QTDIR "/opt/Qt-5.11.1"
  -ENV PATH "$QTDIR/bin:$PATH"
  -
  -RUN wget -q http://download.qt.io/official_releases/qt/5.11/5.11.1/single/qt-everywhere-src-5.11.1.tar.xz \
  -	&& tar -xf qt-everywhere-src-5.11.1.tar.xz \
  -	&& rm qt-everywhere-src-5.11.1.tar.xz \
  -	&& cd qt-everywhere-src-5.11.1 \
  -	&& ./configure -opensource -confirm-license -prefix $QTDIR \
  -		-no-compile-examples \
  -		-no-widgets \
  -		-skip qt3d \
  -		-skip qtactiveqt \
  -		-skip qtandroidextras \
  -		-skip qtcanvas3d \
  -		-skip qtcharts \
  -		-skip qtconnectivity \
  -		-skip qtdatavis3d \
  -		-skip qtdeclarative \
  -		-skip qtdoc \
  -		-skip qtgamepad \
  -		-skip qtgraphicaleffects \
  -		-skip qtimageformats \
  -		-skip qtlocation \
  -		-skip qtmacextras \
  -		-skip qtmultimedia \
  -		-skip qtnetworkauth \
  -		-skip qtpurchasing \
  -		-skip qtquickcontrols \
  -		-skip qtquickcontrols2 \
  -		-skip qtremoteobjects \
  -		-skip qtscript \
  -		-skip qtscxml \
  -		-skip qtsensors \
  -		-skip qtserialbus \
  -		-skip qtserialport \
  -		-skip qtspeech \
  -		-skip qtsvg \
  -		-skip qttools \
  -		-skip qttranslations \
  -		-skip qtvirtualkeyboard \
  -		-skip qtwayland \
  -		-skip qtwebchannel \
  -		-skip qtwebengine \
  -		-skip qtwebglplugin \
  -		-skip qtwebsockets \
  -		-skip qtwebview \
  -		-skip qtwinextras \
  -		-skip qtx11extras \
  -		-skip qtxmlpatterns \
  -	&& make -s -j $(nproc) \
  -	&& make -s install \
  -	&& cd .. \
  -	&& rm -rf qt-everywhere-src-5.11.1
   
   # install python dependencies
   RUN pip3 install -q argparse matplotlib numpy pandas scipy seaborn
  
positive.code: 
  RUN git clone https://github.com/SystemsGenetics/KINC.git \
  	&& cd KINC/build \
  	&& git checkout v3.2.2 \
  	&& qmake ../src/KINC.pro GUI=no \
  	&& make -s -j $(nproc) \
  	&& make -s qmake_all \
  
negative.code: 
  RUN git clone https://github.com/SystemsGenetics/ACE.git \
  	&& cd ACE/build \
  	&& git checkout -q v3.1.0 \
  	&& qmake ../src/ACE.pro GUI=no \
  	&& make -s -j $(nproc) \
  	&& make -s qmake_all \
  