anchor.diff:  RUN unzip picard-tools-1.131.zip
   
   RUN git clone https://github.com/adamewing/exonerate.git
  -RUN cd exonerate
  -RUN ./configure && make && make install
  +RUN cd exonerate && autoreconf -fi && ./configure && make && make install
   
   RUN git clone https://github.com/adamewing/bamsurgeon.git
  -RUN cd bamsurgeon
  -RUN python setup.py install
  +RUN export PATH=$PATH:$HOME/bin && cd bamsurgeon && python setup.py install
  +
  +CMD []
  
positive.code:     git \
      wget \
      libncurses5-dev \
      unzip
  
  RUN pip install cython
  RUN pip install pysam
  
  RUN mkdir $HOME/bin
  RUN export PATH=$PATH:$HOME/bin
  
  RUN wget https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz
  RUN tar xvzf velvet_1.2.10.tgz
  
negative.code: FROM ubuntu:14.04
  MAINTAINER Adam Ewing <adam.ewing@gmail.com>
  
  ENV PATH=$PATH:$HOME/bin
  
  WORKDIR ~/
  RUN apt-get update && apt-get install -y software-properties-common
  