anchor.diff:                      zlib1g-dev \
                       cmake \
                       git \
  +                    python \
                       python3-dev \
                       python3-pip \
                       python3-docopt \
  
positive.code:                  snakemake==3.5.5
  
  WORKDIR /usr/local/src
  RUN git clone https://github.com/kdmurray91/libqes && \
      cd libqes && \
      git checkout 0.1.21 && \
      cmake . && \
      make && make test && make install && \
      rm -rf /usr/local/src/*
  
  RUN git clone https://github.com/kdmurray91/axe && \
      cd axe && \
      git checkout 0.3.1 && \
      cmake . && \
  
negative.code:     cd .. && \
      rm -rf /usr/local/src/*
  
  ADD http://packages.seqan.de/mason2/mason2-2.0.3-Linux-x86_64.tar.xz /usr/local/src/mason2.tar
  RUN tar xvf mason2.tar && \
      mv mason2-*-Linux-x86_64/bin/* /usr/local/bin && \
      rm -rf /usr/local/src/*
  
  ADD https://github.com/najoshi/sabre/archive/master.tar.gz /usr/local/src/sabre-master.tar.gz
  