anchor.diff:      git \
       mercurial \
       curl \
  +    libcurl4-openssl-dev \
       pkg-config \
       python \
       python-pip \
       python-dev \
  -    python-matplotlib \
  +    cython \
  +    libfreetype6-dev \
       libmysqlclient-dev \
       libboost-dev \
       libboost-serialization-dev \
  
positive.code:     bowtie \
      libbz2-dev \
      liblzma-dev \
  && update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-4.9 60 --slave /usr/bin/g++ g++ /usr/bin/g++-4.9 \
  && rm -rf /var/lib/apt/lists/* \
  && apt-get clean \
  
negative.code: RUN pip install --upgrade pip && pip install \
      setuptools==33.1.1 \
      tornado==4.5.3 \
      numpy==1.14.5 \
      pyomo==4.4.1 \
      pysam==0.14.1 \
      tables==3.4.4 \
      pandas==0.23.2 \
      future==0.16.0 \
      matplotlib==1.4.3 \
      && pip install git+https://github.com/FRED-2/Fred2@master
  
  #installing optitype form git repository (version Dec 09 2015) and wirtig config.ini
  