anchor.diff:  #
   # Add Perl deps (needed for OrthoMCL)
   #
  -RUN cpanm --force Carp Storable Bio::SearchIO List::Util Getopt::Long && \
  -    rm -rf /root/.cpanm/work/
  +RUN
   
   #
   # Install and configure OrthoMCL
  
positive.code: RUN cd /opt && \
      tar -xvf omcl.tar && \
      tar -xzvf mcl-02-063.tar.gz && \
      rm -f omcl.tar mcl-02-063.tar.gz
  RUN cd /opt/mcl-* && \
      ./configure && \
      make -j3 && \
      make install && \
  
negative.code: #
  ADD ./ABACAS2 /opt/ABACAS2
  
  ENV AUGUSTUS_CONFIG_PATH /opt/augustus/config
  ENV RATT_HOME /opt/RATT
  ENV GT_RETAINIDS yes
  