anchor.diff:  RUN pip install cutadapt
   
   # Install TrimGalore
  -ENV TRIMGALORE_BIN="trim_galore_v0.4.2.zip"
  -RUN mkdir /opt/TrimGalore && \
  -    curl -fsSL http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/$TRIMGALORE_BIN -o /opt/TrimGalore/$TRIMGALORE_BIN && \
  -    unzip /opt/TrimGalore/$TRIMGALORE_BIN -d /opt/TrimGalore && \
  -    ln -s /opt/TrimGalore/trim_galore /usr/local/bin/trim_galore && \
  -    rm /opt/TrimGalore/$TRIMGALORE_BIN
  +ENV TRIMGALORE_VERSION="0.4.5"
  +RUN curl -fsSL https://github.com/FelixKrueger/TrimGalore/archive/${TRIMGALORE_VERSION}.tar.gz -o /opt/trimgalore_${TRIMGALORE_VERSION}.tar.gz && \
  +    tar xvzf /opt/trimgalore_${TRIMGALORE_VERSION}.tar.gz -C /opt/ && \
  +    ln -s /opt/trimgalore_${TRIMGALORE_VERSION}/trim_galore /usr/local/bin/trim_galore && \
  +    rm /opt/trimgalore_${TRIMGALORE_VERSION}.tar.gz
   
   # Install BWA
   ENV BWA_VERSION="0.7.15"
  
positive.code: ENV PATH=${PATH}:/opt/phantompeakqualtools
  
  # Install DeepTools
  ENV DEEPTOOLS_VERSION="2.4.3"
  RUN pip install git+git://github.com/fidelram/deepTools.git@$DEEPTOOLS_VERSION
  
  # Install ngsplot
  ENV NGSPLOT_VERSION="2.61"
  RUN curl -fsSL https://github.com/shenlab-sinai/ngsplot/archive/${NGSPLOT_VERSION}.tar.gz -o /opt/ngsplot_${NGSPLOT_VERSION}.tar.gz && \
      tar xvzf /opt/ngsplot_${NGSPLOT_VERSION}.tar.gz -C /opt/ && \
      rm /opt/ngsplot_${NGSPLOT_VERSION}.tar.gz
  
negative.code: RUN pip install MACS2
  
  # Install MultiQC
  ENV MULTIQC_VERSION="v1.3"
  RUN pip install git+git://github.com/ewels/MultiQC.git@$MULTIQC_VERSION
  
  # Create UPPMAX root directories
  