anchor.diff:  # RUN apt-get update && apt-get install -y texlive-latex-extra   # required for adjustbox.sty, probably is an easier way
   
   # Install basic commands
  -RUN apt-get -y install links nano wget git
  +RUN apt-get -y install links nano wget git htop
   
   # Install new version of R
   RUN sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
  
positive.code: # Install R packages
  RUN R -e "install.packages(c('devtools', 'gplots', 'httr', 'igraph', 'knitr', 'methods', 'plyr', 'RColorBrewer', 'rJava', 'rjson', 'R.methodsS3', 'R.oo', 'sqldf', 'stringr', 'testthat', 'XML', 'DT', 'htmlwidgets'), repos='http://cran.rstudio.com/')"
  
  RUN R -e 'setRepositories(ind=1:6); \
    options(repos="http://cran.rstudio.com/"); \
    if(!require(devtools)) { install.packages("devtools") }; \
    library(devtools); \
    install_github("ramnathv/rCharts"); \
    install.packages("cgdsr")'
  
  # Install Bioconductor
  RUN R -e "source('http://bioconductor.org/biocLite.R'); biocLite(c('Biobase', 'BiocCheck', 'BiocGenerics', 'BiocStyle', 'S4Vectors', 'IRanges', 'AnnotationDbi'))"
  
  # Install rcellminer/paxtoolsr
  RUN R -e "source('http://bioconductor.org/biocLite.R'); biocLite('rcellminer')"
  #RUN R -e "source('http://bioconductor.org/biocLite.R'); biocLite('rcellminerData')"
  RUN R -e "source('http://bioconductor.org/biocLite.R'); biocLite('paxtoolsr')"
  
  ##### INSTALL IPYRMD
  
  
negative.code: VOLUME /workspace
  WORKDIR /workspace
  
  # https://github.com/ipython/ipython/issues/7062
  CMD sh -c "ipython notebook --ip=*"
  