anchor.diff:    libncurses5\
     libcairo2\
     gfortran\
  -  libboost-all\
  -  libpstreams\
     r-base\
  -  libblas\
     exonerate
   
   RUN locale-gen en_US.UTF-8
  
positive.code: 
  MAINTAINER  keiranmraine@gmail.com
  
  LABEL uk.ac.sanger.cgp="Cancer Genome Project, Wellcome Trust Sanger Institute" \
        version="2.0.0-rc1" \
        description="The CGP WGS pipeline for dockstore.org"
  
  RUN apt-get -yq update
  RUN apt-get install -yq --no-install-recommends\
  
negative.code: ENV R_LIBS $OPT/R-lib
  ENV R_LIBS_USER $R_LIBS
  
  RUN mkdir -p $OPT
  COPY --from=builder $OPT $OPT
  
  COPY scripts/analysisWGS.sh $OPT/bin/analysisWGS.sh
  COPY scripts/ds-cgpwgs.pl $OPT/bin/ds-cgpwgs.pl
  RUN chmod a+x $OPT/bin/analysisWGS.sh $OPT/bin/ds-cgpwgs.pl
  
  USER    ubuntu
  WORKDIR /home/ubuntu
  