anchor.diff: -# MG-RAST dockerfiles
  +# MG-RAST pipeline Dockerfile
   
   FROM debian
   MAINTAINER The MG-RAST team
  
positive.code:     && make install \
      && make clean \
      && cd /root ; rm -rf sortmerna-2* 2*.tar.gz
  
  ### install vsearch 2.43
  RUN cd /root \
      && wget https://github.com/torognes/vsearch/archive/v2.4.3.tar.gz \
  	&& tar xzf v2*.tar.gz \
  	&& cd vsearch-2* \
  	&& sh ./autogen.sh \
  	&& ./configure --prefix=/usr/local/ \
  	&& make \
  	&& make install \
  	&& make clean \
  	&& cd /root ; rm -rf vsearch-2* v2*.tar.gz
  
  ### install skewer
  RUN cd /root \
  
negative.code: 	&& install -s -m555 diamond /usr/local/bin \
  	&& cd /root ; rm -rf diamond
  
  ### install ea-utils
  RUN cd /root \
  	&& git clone https://github.com/ExpressionAnalysis/ea-utils.git  \
  