anchor.diff:  EXPOSE :21
   EXPOSE :8800
   EXPOSE :9001
  -# 8000 is the standard SimpleHTTPServer Server port from python
  -EXPOSE :8000
   
   # Autostart script that is invoked during container start
   CMD ["/usr/bin/startup"]
  
positive.code: 
  WORKDIR /galaxy-central
  
  RUN apt-get -qq update && apt-get install --no-install-recommends -y openssl
  
  # Install deepTools
  
  
  
  RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_python_2_7"
  RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_atlas_3_10"
  RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_gdbm_1_11"
  RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_bzlib_1_0"
  RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_xz_5_0_5"
  RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_readline_6_2"
  
  RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_numpy_1_9"
  RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_scipy_0_14"
  #RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_samtools_0_1_19"
  #RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o devteam --name package_freetype_2_5_2"
  #RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_matplotlib_1_4"
  #RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_pysam_0_8_1"
  #RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_bx_python_0_7_2"
  
  RUN install-repository "--url https://testtoolshed.g2.bx.psu.edu/ -o bgruening --name upload_testing --panel-section-name deepTools"
  
  # Install bowtie2, fastqc
  RUN install-repository "--url https://toolshed.g2.bx.psu.edu/ -o devteam --name bowtie2 --panel-section-id solexa_tools"
  RUN install-repository "--url https://toolshed.g2.bx.psu.edu/ -o devteam --name fastqc --panel-section-id NGS_QC"
  
  # Mark folders as imported from the host.
  VOLUME ["/export/", "/data/", "/var/lib/docker"]
  
negative.code: #
  # VERSION       0.1
  
  FROM bgruening/galaxy-stable:dev
  
  MAINTAINER Björn A. Grüning, bjoern.gruening@gmail.com
  
  