anchor.diff:  
   ENV STAR_FUSION_HOME $SRC/STAR-Fusion_v${STAR_FUSION_VERSION}
   
  -## FusionInspector now included with STAR-Fusion
  -
  -
  -########
   # Samtools
   
   RUN SAMTOOLS_URL="https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2" && \
  
positive.code: ENV DATA /usr/local/data
  RUN mkdir $DATA
  
  
  ## perl lib installations
  
  RUN cpanm install Set::IntervalTree  # now included w/ STAR-Fusion
  RUN cpanm install DB_File
  RUN cpanm install URI::Escape
  RUN cpanm install Carp::Assert
  RUN cpanm install JSON::XS.pm
  
  ######################
  ## Tool installations:
  ######################
  
  
  
  ########
  # GMAP
  
  RUN GMAP_URL="http://research-pub.gene.com/gmap/src/gmap-gsnap-2017-01-14.tar.gz" && \
  
negative.code:     tar xvf gmap-gsnap-2017-01-14.tar.gz && \
      cd gmap-2017-01-14 && ./configure && make && make install
  
  ENV PERL5LIB ${STAR_FUSION_HOME}/PerlLib
  
  
  ## STAR-Fusion:
  
  ENV STAR_FUSION_VERSION=1.1.0
  