anchor.diff:      USER="me" \
       FUNANNOTATE_DB="/opt/databases"
   
  -# some fixes, this symlink appears to break from conda-pack
  -RUN rm "/venv/bin/fasta" && ln -s "/venv/bin/fasta36" "/venv/bin/fasta"
  -
   # now need to install databases for funannotate
   RUN funannotate setup -i all
   
  
positive.code: RUN conda install -c conda-forge conda-pack
  
  # Install funannotate deps from bioconda
  RUN conda create -c conda-forge -c bioconda -c defaults \
      -n funannotate "python>=3.6,<3.9" funannotate "augustus=3.3"
  
  # Since we want the most recent, install from repo, remove snap as broken
  SHELL ["conda", "run", "-n", "funannotate", "/bin/bash", "-c"]
  
negative.code: COPY --from=build /venv /venv
  
  # Install debian snap via apt-get
  RUN apt-get update && apt-get install -y snap && \
      rm -rf /var/lib/apt/lists/* && \
      ln -s /usr/bin/snap-hmm /usr/bin/snap && \
      rm "/venv/bin/fasta" && \
      ln -s "/venv/bin/fasta36" "/venv/bin/fasta"
  
  # add it to the PATH and add env variables
  ENV PATH="/venv/bin:$PATH" \
  