anchor.diff:  #get contribs
   RUN  mkdir /usr/src/LKH \
       && mkdir /usr/src/hdf5 \
  +    && mkdir -p /ImmunoNodes/src/data/tries \
       && curl -Lo /ImmunoNodes/src/data/tries/uniprot_proteome_l8.trie "https://netcologne.dl.sourceforge.net/project/immunonode-files/uniprot_proteome_l8.trie" \
       && curl -Lo /ImmunoNodes/src/data/tries/uniprot_proteome_l9.trie "https://netcologne.dl.sourceforge.net/project/immunonode-files/uniprot_proteome_l9.trie" \
       && curl -Lo /ImmunoNodes/src/data/tries/uniprot_proteome_l10.trie "https://netcologne.dl.sourceforge.net/project/immunonode-files/uniprot_proteome_l10.trie" \
  
positive.code: RUN pip install --upgrade pip && pip install \
      setuptools==33.1.1 \
      tornado==4.5.3 \
      cython \
      numpy \
      pyomo \
      pysam \
      matplotlib \
      tables \
      pandas \
      future \
      && pip install git+https://github.com/FRED-2/Fred2@master
  
  #installing optitype form git repository (version Dec 09 2015) and wirtig config.ini
  
negative.code:     git \
      mercurial \
      curl \
      libcurl4-openssl-dev \
      pkg-config \
      python \
      python-pip \
      python-dev \
      cython \
      libfreetype6-dev \
      libmysqlclient-dev \
      libboost-dev \
      libboost-serialization-dev \
  