anchor.diff:      "${BASH_HEADER}" \
       'python -u /opt/deepvariant/bin/run_deepvariant.py "$@"' > \
       /opt/deepvariant/bin/run_deepvariant && \
  +  printf "%s\n%s\n" \
  +    "${BASH_HEADER}" \
  +    'python -u /opt/deepvariant/bin/deeptrio/run_deeptrio.py "$@"' > \
  +    /opt/deepvariant/bin/deeptrio/run_deeptrio && \
     chmod +x /opt/deepvariant/bin/make_examples \
  +    /opt/deepvariant/bin/deeptrio/make_examples \
       /opt/deepvariant/bin/call_variants \
       /opt/deepvariant/bin/postprocess_variants \
       /opt/deepvariant/bin/vcf_stats_report \
       /opt/deepvariant/bin/show_examples \
       /opt/deepvariant/bin/model_train \
       /opt/deepvariant/bin/model_eval \
  -    /opt/deepvariant/bin/run_deepvariant
  +    /opt/deepvariant/bin/run_deepvariant \
  +    /opt/deepvariant/bin/deeptrio/run_deeptrio
   
   # Copy models
   WORKDIR /opt/models/wgs
  
positive.code: ARG FROM_IMAGE=ubuntu:16.04
  ARG DV_GPU_BUILD=0
  ARG VERSION=1.0.0
  
  FROM ${FROM_IMAGE} as builder
  LABEL maintainer="https://github.com/google/deepvariant/issues"
  
negative.code: ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION}/DeepVariant-inception_v3-${VERSION}+data-hybrid_standard/model.ckpt.meta .
  RUN chmod +r /opt/models/hybrid_pacbio_illumina/model.ckpt*
  
  WORKDIR /opt/models/deeptrio/wgs/child
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-wgs_child_standard/model.ckpt.data-00000-of-00001 .
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-wgs_child_standard/model.ckpt.index .
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-wgs_child_standard/model.ckpt.meta .
  RUN chmod +r /opt/models/deeptrio/wgs/child/model.ckpt*
  
  WORKDIR /opt/models/deeptrio/wgs/parent
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-wgs_parent_standard/model.ckpt.data-00000-of-00001 .
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-wgs_parent_standard/model.ckpt.index .
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-wgs_parent_standard/model.ckpt.meta .
  RUN chmod +r /opt/models/deeptrio/wgs/parent/model.ckpt*
  
  WORKDIR /opt/models/deeptrio/pacbio/child
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-pacbio_child_standard/model.ckpt.data-00000-of-00001 .
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-pacbio_child_standard/model.ckpt.index .
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-pacbio_child_standard/model.ckpt.meta .
  RUN chmod +r /opt/models/deeptrio/wgs/child/model.ckpt*
  
  WORKDIR /opt/models/deeptrio/pacbio/parent
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-pacbio_parent_standard/model.ckpt.data-00000-of-00001 .
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-pacbio_parent_standard/model.ckpt.index .
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-pacbio_parent_standard/model.ckpt.meta .
  RUN chmod +r /opt/models/deeptrio/wgs/parent/model.ckpt*
  
  WORKDIR /opt/models/deeptrio/wes/child
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-wes_child_standard/model.ckpt.data-00000-of-00001 .
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-wes_child_standard/model.ckpt.index .
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-wes_child_standard/model.ckpt.meta .
  RUN chmod +r /opt/models/deeptrio/wgs/child/model.ckpt*
  
  WORKDIR /opt/models/deeptrio/wes/parent
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-wes_parent_standard/model.ckpt.data-00000-of-00001 .
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-wes_parent_standard/model.ckpt.index .
  ADD https://storage.googleapis.com/deepvariant/models/DeepTrio/${VERSION_DEEPTRIO}/DeepTrio-inception_v3-${FULL_VERSION_DEEPTRIO}+data-wes_parent_standard/model.ckpt.meta .
  RUN chmod +r /opt/models/deeptrio/wgs/parent/model.ckpt*
  
  RUN apt-get -y update && \
    apt-get install -y parallel && \
    PATH="${HOME}/.local/bin:$PATH" pip3 install absl-py==0.8.1
  