anchor.diff:  RUN Rscript /install.r sna 2.4
   # Create a new user "developer".
   # It will get access to the X11 session in the host computer
  -# ENV uid=1000
  -# ENV gid=${uid}
  -#
  -# COPY create_user.sh /
  -#
  -# CMD /create_user.sh && sudo -H -u developer /bin/bash
  +ENV uid=1000
  +ENV gid=${uid}
   
  +COPY create_user.sh /
  +
  +CMD /create_user.sh && sudo -H -u developer /bin/bash
  +
  
positive.code: FROM sinclab/webdemo-base-r3:latest
  MAINTAINER Cristian Yones <cyones@sinc.unl.edu.ar>
  
  # Web Demo Builder - Base Docker image for R 3.1
  
negative.code: ENV bioconductor_url="http://bioconductor.org/packages/3.0/bioc/src/contrib/"
  ENV bioconductor_data_url="http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/"
  
  RUN echo deb http://cran.us.r-project.org/bin/linux/ubuntu trusty/ > /etc/apt/sources.list.d/r.list
  RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
  
  # Install base packages
  RUN DEBIAN_FRONTEND=noninteractive \
      apt-get update && apt-get install -y --no-install-recommends \
        r-base \
        r-recommended \
        r-base-dev \
        imagemagick && \
      rm -rf /var/lib/apt/lists/*
  
  
  # r packages
  COPY install.r /
  
  RUN Rscript /install.r BiocInstaller 1.16.5 ${bioconductor_url}
  RUN Rscript /install.r preprocessCore 1.28.0 ${bioconductor_url}
  RUN Rscript /install.r BiocGenerics 0.12.1 ${bioconductor_url}
  RUN Rscript /install.r Biobase 2.26.0 ${bioconductor_url}
  RUN Rscript /install.r DBI 0.3.1
  RUN Rscript /install.r RSQLite 1.0.0
  RUN Rscript /install.r S4Vectors 0.4.0 ${bioconductor_url}
  RUN Rscript /install.r IRanges 2.0.1 ${bioconductor_url}
  RUN Rscript /install.r GenomeInfoDb 1.2.5 ${bioconductor_url}
  RUN Rscript /install.r AnnotationDbi 1.28.2 ${bioconductor_url}
  RUN Rscript /install.r Rcpp 0.11.5
  RUN Rscript /install.r RcppEigen 0.3.2.4.0
  RUN Rscript /install.r minqa 1.2.4
  RUN Rscript /install.r nloptr 1.0.4
  RUN Rscript /install.r lme4 1.1-7
  RUN Rscript /install.r profileModel 0.5-9
  RUN Rscript /install.r brglm 0.5-9
  RUN Rscript /install.r qvcalc 0.8-9
  RUN Rscript /install.r relimp 1.0-4
  RUN Rscript /install.r gnm 1.0-7
  RUN Rscript /install.r gtools 3.4.1
  RUN Rscript /install.r BradleyTerry2 1.0-6
  RUN Rscript /install.r pbkrtest 0.4-2
  RUN Rscript /install.r SparseM 1.6
  RUN Rscript /install.r quantreg 5.11
  RUN Rscript /install.r car 2.0-25
  RUN Rscript /install.r plyr 1.8.1
  RUN Rscript /install.r digest 0.6.8
  RUN Rscript /install.r gtable 0.1.2
  RUN Rscript /install.r stringr 0.6.2
  RUN Rscript /install.r reshape2 1.4.1
  RUN Rscript /install.r RColorBrewer 1.1-2
  RUN Rscript /install.r dichromat 2.0-0
  RUN Rscript /install.r colorspace 1.2-6
  RUN Rscript /install.r munsell 0.4.2
  RUN Rscript /install.r labeling 0.3
  RUN Rscript /install.r scales 0.2.4
  RUN Rscript /install.r proto 0.3-10
  RUN Rscript /install.r ggplot2 2.0.0
  RUN Rscript /install.r iterators 1.0.7
  RUN Rscript /install.r foreach 1.4.2
  RUN Rscript /install.r caret 6.0-41
  RUN Rscript /install.r doParallel 1.0.10
  RUN Rscript /install.r e1071 1.6-4
  RUN Rscript /install.r gridExtra 0.9.1
  RUN Rscript /install.r Matrix 1.2-0
  RUN Rscript /install.r segmented 0.5-1.1
  RUN Rscript /install.r mixtools 1.0.2
  
  # packages added by Cristian Yones
  RUN Rscript /install.r magrittr 1.5
  RUN Rscript /install.r registry 0.3
  RUN Rscript /install.r RSpectra 0.12-0
  RUN Rscript /install.r CORElearn 1.48.0
  RUN Rscript /install.r cluster 2.0.5
  