anchor.diff:      "--url http://toolshed.g2.bx.psu.edu/ -o bgruening --name deeptools --panel-section-name deepTools" \
       "--url http://toolshed.g2.bx.psu.edu/ -o devteam --name data_manager_bwa_index_builder" \
       "--url http://toolshed.g2.bx.psu.edu/ -o devteam --name bwa_wrappers --panel-section-name Mapping" \
  -    "--url http://toolshed.g2.bx.psu.edu/ -o crs4 --name bwa_mem  --panel-section-name Mapping"
  +    "--url http://toolshed.g2.bx.psu.edu/ -o iuc --name bwa_mem  --panel-section-name Mapping"
   
   
   RUN install-repository \
       "--url http://toolshed.g2.bx.psu.edu/ -o iuc --name vt_variant_tools --panel-section-name VCFtools" \
  -    "--url http://toolshed.g2.bx.psu.edu/ -o anton --name suite_vcflib_tools_2_0 --panel-section-name VCFtools" \
  +    "--url http://toolshed.g2.bx.psu.edu/ -o iuc --name suite_vcflib_tools_2_0 --panel-section-name VCFtools" \
       "--url http://toolshed.g2.bx.psu.edu/ -o iuc --name snpeff --panel-section-name SNPEff"
   
   # Install GEMINI and BED tools
  
positive.code: MAINTAINER Björn A. Grüning, bjoern.gruening@gmail.com
  
  ENV GALAXY_CONFIG_BRAND Exom Sequencing Pipeline
  
  WORKDIR /galaxy-central
  
  # Enable TTS installation
  ENV GALAXY_CONFIG_TOOL_SHEDS_CONFIG_FILE $GALAXY_HOME/tool_sheds_conf.xml
  
  # Install GATK2, samtools and 
  RUN install-repository \
  
negative.code:     "--url http://toolshed.g2.bx.psu.edu/ -o iuc --name package_gemini_0_10_0" \
      "--url http://toolshed.g2.bx.psu.edu/ -o iuc --name data_manager_gemini_database_downloader" \
      "--url http://toolshed.g2.bx.psu.edu/ -o iuc --name gemini --panel-section-name VariantSelection" \
      "--url http://toolshed.g2.bx.psu.edu/ -o iuc --name bedtools --panel-section-name BEDtools"
  
  # RUN install-repository "--url http://toolshed.g2.bx.psu.edu/ -o crs4 --name kggseq_variant_selection --panel-section-name VariantSelection"
  
  