anchor.diff: -# Generated by Neurodocker v0.2.0-30-g4b9bd64.
  +# Generated by Neurodocker v0.3.1-19-g8d02eb4.
   #
  -# Thank you for using Neurodocker. If you discover any issues 
  -# or ways to improve this software, please submit an issue or 
  +# Thank you for using Neurodocker. If you discover any issues
  +# or ways to improve this software, please submit an issue or
   # pull request on our GitHub repository:
   #     https://github.com/kaczmarj/neurodocker
   #
  -# Timestamp: 2017-09-06 14:26:38
  +# Timestamp: 2017-11-03 19:55:05
   
   FROM neurodebian:stretch-non-free
   
  
positive.code:     \n      "neurodebian:stretch-non-free" \
      \n    ], \
      \n    [ \
      \n      "instruction", \
      \n      "RUN curl -sL https://deb.nodesource.com/setup_6.x | bash -" \
      \n    ], \
      \n    [ \
      \n      "install", \
      \n      [ \
      \n        "ants", \
      \n        "dcm2niix", \
      \n        "convert3d", \
      \n        "graphviz", \
      \n        "tree", \
      \n        "git-annex-standalone", \
  
negative.code:     \n      } \
      \n    ], \
      \n    [ \
      \n      "user", \
      \n      "neuro" \
      \n    ], \
      \n    [ \
      \n      "miniconda", \
      \n      { \
      \n        "conda_install": "python=3.6 jupyter jupyterlab jupyter_contrib_nbextensions traits pandas matplotlib scikit-learn seaborn swig reprozip reprounzip", \
      \n        "pip_install": "https://github.com/nipy/nipype/tarball/master https://github.com/INCF/pybids/tarball/master nilearn datalad[full] dipy nipy duecredit pymvpa2", \
      \n        "env_name": "neuro", \
      \n        "activate": "True" \
      \n      } \
      \n    ], \
      \n    [ \
      \n      "run_bash", \
      \n      "source activate neuro && jupyter nbextension enable exercise2/main && jupyter nbextension enable spellchecker/main" \
      \n    ], \
      \n    [ \
      \n      "run", \
      \n      "mkdir -p ~/.jupyter && echo c.NotebookApp.ip = \\\"0.0.0.0\\\" > ~/.jupyter/jupyter_notebook_config.py" \
      \n    ], \
      \n    [ \
      \n      "copy", \
      \n      [ \
      \n        ".", \
      \n        "/home/neuro/" \
      \n      ] \
      \n    ], \
      \n    [ \
      \n      "user", \
      \n      "root" \
      \n    ], \
      \n    [ \
      \n      "run", \
      \n      "chown -R neuro /home/neuro" \
      \n    ], \
      \n    [ \
      \n      "run", \
      \n      "mkdir /data && chmod 777 /data && chmod a+s /data" \
      \n    ], \
      \n    [ \
      \n      "run", \
      \n      "mkdir /output && chmod 777 /output && chmod a+s /output" \
      \n    ], \
      \n    [ \
      \n      "user", \
      \n      "neuro" \
      \n    ], \
      \n    [ \
      \n      "run_bash", \
      \n      "source activate neuro && cd\t/data && datalad install -r ///workshops/nih-2017/ds000114\\n&& cd /data/ds000114 && datalad get sub-*/ses-test/anat && datalad get sub-*/ses-test/func/*fingerfootlips* && datalad get derivatives/fmriprep/sub-*/anat && datalad get derivatives/fmriprep/sub-*/ses-test/func/*fingerfootlips*" \
      \n    ], \
      \n    [ \
      \n      "workdir", \
      \n      "/home/neuro" \
      \n    ], \
      \n    [ \
      \n      "cmd", \
      \n      [ \
      \n        "jupyter-notebook" \
      \n      ] \
      \n    ] \
      \n  ], \
      \n  "generation_timestamp": "2017-11-03 19:55:05", \
      \n  "neurodocker_version": "0.3.1-19-g8d02eb4" \
      \n}' > /neurodocker/neurodocker_specs.json
  