anchor.diff:  
   #------------------ Variant Annotation & Reports -------------------------
   # + ANNOVAR (see licence, and registration)
  -#ADD
  -#RUN
  +# Available on reg:  http://www.openbioinformatics.org/annovar/download/Ht8qRwQSTi/annovar.latest.tar.gz
  +# hmmm... no version on tar.
  +ADD annovar.latest.tar.gz /usr/local/pipeline/
  +RUN chown -R pipeman:ngsgroup /usr/local/pipeline/annovar \
  +    && sed -i '$aPATH=${PATH}:/usr/local/pipeline/pipeline/annovar' /home/pipeman/.bashrc
   
   
  -
  -#---------------------- NGS PIPELINE  --------------------------------
  +#------------------------- NGS PIPELINE ----------------------------------
   RUN cd /usr/local/pipeline \
       && git clone https://github.com/KHP-Informatics/ngs.git \
       && sed -i '$aPATH=${PATH}:/usr/local/pipeline/ngs/molpath_ngs' /home/pipeman/.bashrc
  
positive.code: 
  
  
  
  
  
  # Cleanup the temp dir
  RUN rm -rf /tmp/*
  
  
negative.code: #---------------------- Sequence Aligners --------------------------------
  # Aligner options: 1)*novoalign*  2)bowtie, 3)stampy, 4)bwa
  
  # + novoalign (registration required,  get compressed file and put in context dir for the build)
  ADD novocraftV3.02.06.Linux3.0.tar.gz /usr/local/pipeline/novocraftV3.02.06.Linux3.0
  RUN sed  -i '$aPATH=${PATH}:/usr/local/pipeline/novocraftV3.02.06.Linux3.0/novocraft' /home/pipeman/.bashrc
  
  