anchor.diff:  #
   ADD ./ABACAS2 /opt/ABACAS2
   
  -#
  -# install gff3 to EMBL converter
  -#
  -ADD https://github.com/sanger-pathogens/gff3toembl/archive/master.zip /opt/gff3toembl-master.zip
  -RUN cd /opt && \
  -    unzip gff3toembl-master.zip && \
  -    cd /opt/gff3toembl-master && \
  -    python setup.py install
  -
   ENV AUGUSTUS_CONFIG_PATH /opt/augustus/config
   ENV RATT_HOME /opt/RATT
   ENV GT_RETAINIDS yes
   ENV PERL5LIB /opt/ORTHOMCLV1.4/:/opt/RATT/:/opt/ABACAS2/:$PERL5LIB
  -ENV PATH /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/augustus/bin:/opt/augustus/scripts:/opt/ORTHOMCLV1.4:/opt/RATT:/opt/ABACAS2:/opt/aragorn:$PATH
  +ENV PATH /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/augustus/bin:/opt/augustus/scripts:/opt/ORTHOMCLV1.4:/opt/RATT:/opt/ABACAS2:$PATH
  
positive.code:     python setup.py install && \
      cd / && \
      rm -rf /opt/genometools-master*
  
  #
  # Install ARAGORN
  # (this is done from source instead of Debian b/c Debian-built version hangs)
  #
  ADD http://mbio-serv2.mbioekol.lu.se/ARAGORN/Downloads/aragorn1.2.36.tgz /opt/aragorn.tgz
  RUN cd /opt && \
      tar -xvf aragorn.tgz && \
      mv aragorn1* aragorn && \
      cd aragorn && \
      gcc -o aragorn aragorn*.c
  
  #
  # Install and configure OrthoMCL
  
negative.code:     rm -rf gblocks64.tar.Z && \
      cp Gblocks_0.91b/Gblocks /usr/bin/Gblocks && \
      chmod 755 /usr/bin/Gblocks
  
  #
  # get GO OBO file
  