anchor.diff:  FROM bids/base_fsl
  -
   
   #### FreeSurfer
   RUN apt-get -y update && \
  
positive.code: RUN sudo apt-get update && apt-get install -y python3-pip
  RUN pip3 install pandas
  RUN pip3 install pybids
  
  RUN apt-get install -y tree htop
  RUN apt-get install -y tcsh
  RUN apt-get install -y bc
  RUN apt-get install -y tar libgomp1 perl-modules
  
  RUN apt-get install -y curl
  RUN curl -sL https://deb.nodesource.com/setup_6.x | bash -
  RUN apt-get install -y nodejs
  RUN npm install -g bids-validator@0.19.8
  
  
  RUN mkdir /scratch
  RUN mkdir /local-scratch
  
negative.code: COPY tracula.py /code/tracula.py
  RUN chmod +x /code/run.py
  
  # freesurfer repo
  RUN wget https://github.com/bids-apps/freesurfer/archive/v6.0.0-4.tar.gz && \
  tar xfz v6.0.0-4.tar.gz && rm -r v6.0.0-4.tar.gz && \
  cd freesurfer-6.0.0-4 && mv run.py /code/run_freesurfer.py
  RUN touch /code/version
  ENV PATH=/code:$PATH
  
  COPY version /version
  
  ENTRYPOINT ["/code/run.py"]
  