anchor.diff:  RUN apt-get install git -y
   
   # Kent
  -RUN for i in faToTwoBit gff3ToGenePred genePredToBed genePredToFakePsl bamToPsl transMapPslToGenePred pslPosTarget axtChain chainMergeSort pslMap pslRecalcMatch pslMapPostChain gtfToGenePred genePredToGtf bedtools blat pslCheck pslCDnaFilter clusterGenes pslToBigPsl bedSort bedToBigBed ; do wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/$i -O /bin/$i ; chmod +x /bin/$i ; done
  +RUN for i in wigToBigWig faToTwoBit gff3ToGenePred genePredToBed genePredToFakePsl bamToPsl transMapPslToGenePred pslPosTarget axtChain chainMergeSort pslMap pslRecalcMatch pslMapPostChain gtfToGenePred genePredToGtf bedtools blat pslCheck pslCDnaFilter clusterGenes pslToBigPsl bedSort bedToBigBed ; do wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/$i -O /bin/$i ; chmod +x /bin/$i ; done
   
   # bedtools
   RUN apt-get install bedtools -y
  
positive.code: # sambamba
  RUN wget https://github.com/biod/sambamba/releases/download/v0.6.7/sambamba_v0.6.7_linux.tar.bz2
  RUN tar xvjf sambamba_v0.6.7_linux.tar.bz2
  
negative.code: RUN git clone git://github.com/glennhickey/hal.git
  RUN /bin/bash -c "pushd sonLib && make && popd"
  RUN cd hal && make
  
  # LibBigWig
  RUN git clone https://github.com/dpryan79/libBigWig.git
  