anchor.diff:  RUN STAR_FUSION_URL="https://github.com/STAR-Fusion/STAR-Fusion/releases/download/v${STAR_FUSION_VERSION}/STAR-Fusion_v${STAR_FUSION_VERSION}.tar.gz" && \
       cd $SRC && \
       wget $STAR_FUSION_URL && \
  -    tar xvf STAR-Fusion_v${STAR_FUSION_VERSION}.tar.gz && \
  +    tar xvf STAR-Fusion_v${STAR_FUSION_VERSION}.tar.gz &&  rm STAR-Fusion_v${STAR_FUSION_VERSION}.tar.gz && \
       cd STAR-Fusion_v${STAR_FUSION_VERSION} && make
   
   ENV STAR_FUSION_HOME $SRC/STAR-Fusion_v${STAR_FUSION_VERSION}
   
  -# Samtools
  -
  -RUN SAMTOOLS_URL="https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2" && \
  -   cd $SRC && \
  -   wget $SAMTOOLS_URL && \
  -   tar xvf samtools-1.3.1.tar.bz2 && \
  -   cd samtools-1.3.1/htslib-1.3.1 && ./configure && make && make install && \
  -   cd ../ && ./configure --without-curses && make && make install
   
   # Trinity
   
  
positive.code: RUN TRINITY_URL="https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v${TRINITY_VERSION}.tar.gz" && \
     cd $SRC && \
     wget $TRINITY_URL && \
     tar xvf Trinity-v${TRINITY_VERSION}.tar.gz && \
     cd trinityrnaseq-Trinity-v${TRINITY_VERSION} && make
  
  
  
negative.code: RUN GMAP_URL="http://research-pub.gene.com/gmap/src/gmap-gsnap-2017-01-14.tar.gz" && \
      cd $SRC && \
      wget $GMAP_URL && \
      tar xvf gmap-gsnap-2017-01-14.tar.gz && rm gmap-gsnap-2017-01-14.tar.gz &&\
      cd gmap-2017-01-14 && ./configure && make && make install
  
  ENV PERL5LIB ${STAR_FUSION_HOME}/PerlLib
  