anchor.diff:  GALAXY_HANDLER_NUMPROCS=2 \
   # Setting a standard encoding. This can get important for things like the unix sort tool.
   LC_ALL=en_US.UTF-8 \
  -LANG=en_US.UTF-8
  +LANG=en_US.UTF-8 \
  +GALAXY_CONDA_PREFIX=$GALAXY_CONFIG_TOOL_DEPENDENCY_DIR/_conda
   
   RUN locale-gen en_US.UTF-8 && dpkg-reconfigure locales
   
  
positive.code: 
  RUN mkdir /shed_tools && chown $GALAXY_USER:$GALAXY_USER /shed_tools && \
      mkdir $EXPORT_DIR/ftp/ && chown $GALAXY_USER:$GALAXY_USER $EXPORT_DIR/ftp && \
      mkdir /tool_deps/ && chown $GALAXY_USER:$GALAXY_USER /tool_deps && \
      ln -s /tool_deps/ $EXPORT_DIR/tool_deps && chown $GALAXY_USER:$GALAXY_USER $EXPORT_DIR/tool_deps # Configure Galaxy to use the Tool Shed
  
  # The following commands will be executed as the galaxy user
  
negative.code:     npm install
  
  # the following can be removed with 18.01
  RUN /tool_deps/_conda/bin/conda create -y --override-channels --channel iuc --channel conda-forge --channel bioconda --channel defaults --name mulled-v1-eb2018fd3ce0fcbcee48a4bf89c57219add691c16729281b6c46b30f08339397 samtools=1.3.1 bcftools=1.5
  
  # Switch back to User root
  USER root
  