anchor.diff:  # Copy /venv from the previous stage:
   COPY --from=build /venv /venv
   
  +# Install debian snap via apt-get
  +RUN apt-get update && apt-get install -y snap \
  +    && rm -rf /var/lib/apt/lists/* && \
  +    ln -s /usr/bin/snap-hmm /usr/bin/snap
  +
   # add it to the PATH and add env variables
   ENV PATH="/venv/bin:$PATH" \
       AUGUSTUS_CONFIG_PATH="/venv/config" \
  
positive.code:     PASAHOME="/venv/opt/pasa-2.4.1" \
      TRINITYHOME="/venv/opt/trinity-2.8.5" \
      QUARRY_PATH="/venv/opt/codingquarry-2.0/QuarryFiles" \
      USER="me" \
      FUNANNOTATE_DB="/opt/databases"
  
  
negative.code: 
  # Install funannotate deps from bioconda
  RUN conda create -c conda-forge -c bioconda -c defaults \
      -n funannotate "python>=3.6,<3.9" funannotate "augustus=3.3"
  
  # Since we want the most recent, install from repo, remove snap as broken
  SHELL ["conda", "run", "-n", "funannotate", "/bin/bash", "-c"]
  RUN conda remove --force -n funannotate funannotate snap && \
      python -m pip install git+https://github.com/nextgenusfs/funannotate.git
  
  # package with conda-pack
  