anchor.diff:  MAINTAINER Tiago Antao <tiagoantao@gmail.com>
   
   ENV DEBIAN_FRONTEND noninteractive
  -ENV PVER ""
   
   ##We need this for phylip
   #RUN echo 'deb http://archive.ubuntu.com/ubuntu utopic multiverse' >> /etc/apt/sources.list
  
positive.code: #RUN echo "export LANG=en_US.UTF-8" >> entrypoint.sh
  
  #R
  RUN apt-get install -y r-bioc-base r-cran-ggplot2
  
  RUN apt-get clean
  
  
negative.code: #RUN cp fsc_linux64/fsc251 /usr/bin
  #RUN rm -rf fsc_*
  
  RUN wget http://repo.continuum.io/miniconda/Miniconda-3.7.0-Linux-x86_64.sh
  #Presumes aceptance of the license
  RUN bash Miniconda-3.7.0-Linux-x86_64.sh -b
  RUN root/miniconda/bin/conda install --yes biopython=1.64
  RUN root/miniconda/bin/conda install --yes scipy 
  RUN root/miniconda/bin/conda install --yes matplotlib
  RUN root/miniconda/bin/conda install --yes ipython-notebook
  RUN root/miniconda/bin/conda install --yes binstar
  RUN root/miniconda/bin/conda install --yes scikit-learn
  RUN root/miniconda/bin/conda install --yes statsmodels
  RUN root/miniconda/bin/conda install --yes pysam
  RUN root/miniconda/bin/conda install --yes conda-build
  
  RUN root/minconda/bin/pip install rpy2
  RUN root/minconda/bin/pip install pygraphviz
  RUN root/minconda/bin/pip install seaborn
  RUN root/minconda/bin/pip install pyvcf
  RUN root/minconda/bin/pip install dendropy
  #RUN root/minconda/bin/pip install
  
  EXPOSE 9875
  
  RUN git clone https://github.com/tiagoantao/bioinf-python.git
  WORKDIR /bioinf-python/notebooks
  
  CMD /root/miniconda/bin/ipython notebook --ip=0.0.0.0 --no-browser --port=9875
  