anchor.diff:  # clean up dev stuff (not strictly necessary)
   #
   RUN apt-get purge build-essential --yes --force-yes
  -RUN apt-get remove liblua5.1-0-dev lua-md5-dev lua-filesystem-dev lua-lpeg-dev \
  -                   libcairo2-dev zlib1g-dev libbz2-dev libexpat1-dev \
  -                   libncurses5-dev libsqlite3-dev libbam-dev libpango1.0-dev \
  -                   libtre-dev --yes --force-yes
   
   ENV AUGUSTUS_CONFIG_PATH /opt/augustus/config
   ENV RATT_HOME /opt/RATT
  
positive.code: RUN cd /opt && \
      unzip genometools-master.zip && \
      cd /opt/genometools-master && \
      make -j3 && \
      make -j3 install && \
      cd / && \
      rm -rf /opt/genometools-master*
  
  
negative.code: # Install dependencies from Debian
  #
  RUN apt-get install build-essential hmmer lua5.1 blast2 snap \
                      unzip cpanminus mummer infernal exonerate \
                      --yes --force-yes
  
  #
  