anchor.diff: -#Needs notes to tell what AAARF is etc
  +#See documentation at https://github.com/jdebarry/AAARF for details on AAARF
   
   FROM genomicpariscentre/bioperl:latest
   
  
positive.code: #install cpan minus modeled from http://perlmaven.com/install-perl-modules-without-root-rights-on-linux-ubuntu-13-10
  RUN apt-get -qq install curl && curl -L http://cpanmin.us | perl - App::cpanminus
  
  # Install BioPerl Run Package last built for Bio::Tools::Run::Alignment::Clustalw; use Bio::Tools::Run::Alignment::TCoffee; use Bio::Tools::Run::StandAloneBlast modeled from genomicpariscentre/bioperl:latest
  RUN cpanm --force CJFIELDS/BioPerl-Run-1.006900.tar.gz
  
  #Install Log4perl modeled on https://hub.docker.com/r/pamtrak06/rok4-ubuntu14.04/~/dockerfile/
  
negative.code: ADD https://github.com/jdebarry/AAARF/blob/master/v1.0.1/AAARFv1.0.1.pl /
  
  CMD perl AAARFv1.0.1.pl --inputfile=ZU_1000.fasta
  