anchor.diff:  WORKDIR /build
   
   #########
  +### Setup the envirenment
  +#########
  +ENV DEBIAN_FRONTEND noninteractive
  +ENV LC_ALL en_GB.UTF-8
  +ENV LANG en_GB.UTF-8
  +ENV LANGUAGE en_GB:en
  +
  +#########
   ### Aptitude packages
   #########
  +RUN apt update \
  +    && apt -y upgrade \
  +    && apt install -y --reinstall language-pack-en \
  +    && locale-gen en_GB.UTF-8
   RUN apt update && apt install -y build-essential git python python-pip libxml2-dev libz-dev curl wget
   
   
  
positive.code: #########
  RUN pip install --upgrade pip
  
  
  #########
  ### Oyster River Protocol (ORP)
  #########
  WORKDIR /home/training
  RUN git clone https://github.com/macmanes-lab/Oyster_River_Protocol.git
  RUN cd Oyster_River_Protocol && make
  RUN sed -i  "s_ubuntu_training_g" /home/training/Oyster_River_Protocol/software/config.ini
  USER root
  
  #########
  ### Path
  
negative.code: RUN echo 'PATH=$PATH:/home/training/Oyster_River_Protocol/software/OrthoFinder/orthofinder' >> /home/training/.profile
  RUN echo 'PATH=$PATH:/home/training/Oyster_River_Protocol/software/orp-transrate' >> /home/training/.profile
  RUN echo 'PATH=$PATH:/home/training/Oyster_River_Protocol/software/transabyss' >> /home/training/.profile
  RUN /bin/bash -c "source /home/training/.profile"
  ENV PATH="/home/training/Oyster_River_Protocol/software/transabyss:/home/training/Oyster_River_Protocol/software/orp-transrate:/home/training/Oyster_River_Protocol/software/OrthoFinder/orthofinder:/home/training/Oyster_River_Protocol/software/anaconda/install/bin:${PATH}"
  
  #########
  ### Clean up
  #########
  USER root
  WORKDIR /
  RUN rm -rf /build
  
  #########
  ### Setup init workspace
  #########
  WORKDIR $HOME
  USER training
  