anchor.diff:  RUN apt-get update -q -q
   
   #
  -# Install utils
  -#
  -RUN apt-get install build-essential --yes --force-yes
  -
  -#
   # Install dependencies from Debian
   #
  -RUN apt-get install aragorn hmmer lua5.1 ncbi-blast+ snap --yes --force-yes
  -RUN apt-get install liblua5.1-0 libcairo2 zlib1g libbz2-1.0 libexpat1 libpth20 \
  -                    libncurses5 libsqlite3-0 libpango-1.0-0  \
  +RUN apt-get install build-essential aragorn hmmer lua5.1 ncbi-blast+ snap \
  +                    liblua5.1-0 libcairo2 zlib1g libbz2-1.0 libexpat1 libpth20 \
  +                    libncurses5 libsqlite3-0 libpango-1.0-0 \
                       libpangocairo-1.0-0 libtre5 python-ctypes liblua5.1-0-dev \
                       lua-md5-dev lua-filesystem-dev lua-lpeg-dev libcairo2-dev \
                       zlib1g-dev libbz2-dev libexpat1-dev libncurses5-dev \
                       libsqlite3-dev libbam-dev libpango1.0-dev libtre-dev \
  -                    python --yes --force-yes
  +                    python unzip bioperl libstorable-perl mummer \
  +                    --yes --force-yes
   
   #
   # Install AUGUSTUS
  
positive.code:     mv augustus* augustus && \
      cd augustus && \
      make
  
  #
  # Install Git
  #
  RUN apt-get install unzip --yes --force-yes
  
  #
  # Install GenomeTools (most recent git master)
  
negative.code: #
  # Install OrthoMCL
  #
  ADD http://www.orthomcl.org/common/downloads/software/unsupported/v1.4/ORTHOMCL_V1.4_mcl-02-063.tar /opt/omcl.tar
  RUN cd /opt && \
      tar -xvf omcl.tar && \
  