anchor.diff:  	&& cd blatSrc \
   	&& make BINDIR=/usr/local/bin/ \
   	&& strip /usr/local/bin/blat \
  -	&& cd .. \
  -	&& rm -rf blatSrc blatSrc35.zip
  +	&& cd /root ; rm -rf blatSrc blatSrc35.zip
   
   ### install FragGeneScan from our patched source in github
   RUN cd /root \
  
positive.code: ### install DIAMOND
  RUN cd /root \
  	&& git clone https://github.com/bbuchfink/diamond.git \
  	&& mkdir -p /root/diamond \
  	&& cd /root/diamond \
  	# && cat build_simple.sh | sed s/-static//g > build_simple.sh \
  	&& sh ./build_simple.sh \
  	&& install -s -m555 diamond /usr/local/bin \
  	&& cd /root ; rm -rf /root/diamond
  
  ### install swarm 2.1.9
  RUN cd /root \
  
negative.code: 	&& install -m755 -s fastq-multx /usr/local/bin \
  	&& install -m755 -s fastq-join /usr/local/bin \
  	&& install -m755 -s fastq-mcf /usr/local/bin \
  	&& cd /root ; rm -rf ea-utils
  
  ### install sortmerna
  RUN cd /root \
  	&& wget https://github.com/biocore/sortmerna/archive/2.1b.tar.gz \
  	&& tar xvf 2*.tar.gz \
  	&& cd sortmerna-2* \
  	&& sed -i 's/^\#define READLEN [0-9]*/#define READLEN 500000/' include/common.hpp \
  	&& ./configure \
      && make install \
      && make clean \
      && cd /root ; rm -rf sortmerna-2* 2*.tar.gz
  
  ### install vsearch 2.43
  RUN cd /root \
  