anchor.diff:  	liburi-encode-perl \
   	libunicode-escape-perl \
   	libwww-perl \
  +	make 		\
   	python-biopython \
   	python-dev \
   	python-pip \ 					
  
positive.code: 	&& mv train bin/. \
  	&& mv *.pl bin/. \
  	&& install -s -m555 FragGeneScan bin/. \
  	&& cd .. \
  	&& echo "export PATH=/root/FragGeneScan/bin:\$PATH" >> /root/mgrast_env.sh
  
  
negative.code: FROM	debian
  MAINTAINER The MG-RAST team
  
  ENV LC_ALL UTF-8
  RUN echo 'LC_ALL=UTF-8' >> /etc/environment 
  ENV DEBIAN_FRONTEND noninteractive
  RUN echo 'DEBIAN_FRONTEND=noninteractive' >> /etc/environment
  
  RUN apt-get update && apt-get install -y \
  	bowtie2 	\
  	build-essential \
  	cdbfasta 	\
  	cd-hit		\
  	dh-autoreconf \
  	git 		\
  	jellyfish 	\
  	libcwd-guard-perl \
  	libberkeleydb-perl \
  	libdata-dump-streamer-perl \
  