anchor.diff:      matplotlib \
       tables \
       pandas \
  -    future
  +    future \
  +    && pip install git+https://github.com/FRED-2/Fred2@master
   
   #installing optitype form git repository (version Dec 09 2015) and wirtig config.ini
   RUN git clone https://github.com/FRED-2/OptiType.git \
  
positive.code: ENV HDF5_DIR /usr/local/
  
  RUN pip install --upgrade pip && pip install \
      cython \
      numpy \
      pyomo \
  
negative.code:     && chmod 777 /usr/local/bin/seq2hla/seq2HLA.py 
  
  #Fred2
  #RUN pip install --upgrade pip && pip install git+https://github.com/FRED-2/Fred2@master
  
  
  #set envirnomental variables for prediction methods
  