anchor.diff:  
   # Install BioConductor and proBAMr
   RUN R --vanilla -e 'source("http://bioconductor.org/biocLite.R"); biocLite(ask=F)' && \
  -    R --vanilla -e 'source("http://bioconductor.org/biocLite.R"); biocLite(c("RGalaxy", "proBAMr"), ask=F)'
  +    R --vanilla -e 'source("http://bioconductor.org/biocLite.R"); biocLite(c("RGalaxy", "proBAMr", "customProDB"), ask=F)'
   
   # /etc/ssl/private can't be accessed from within container for some reason
   # (@andrewgodwin says it's something AUFS related)  - taken from https://github.com/orchardup/docker-postgresql/blob/master/Dockerfile
   # MCC: this seems necessary for the Docker Hub build, which must be using AUFS; my local builds using devicemapper work without this
  -RUN cp -r /etc/ssl /tmp/ssl-copy/ && \
  -    chmod -R 0700 /etc/ssl && \
  -    chown -R postgres /tmp/ssl-copy && \
  -    rm -r /etc/ssl && \
  -    mv /tmp/ssl-copy /etc/ssl
  +#RUN cp -r /etc/ssl /tmp/ssl-copy/ && \
  +#    chmod -R 0700 /etc/ssl && \
  +#    chown -R postgres /tmp/ssl-copy && \
  +#    rm -r /etc/ssl && \
  +#    mv /tmp/ssl-copy /etc/ssl
   
   # Install Bingomics tools into Galaxy
   RUN add-tool-shed --url 'http://testtoolshed.g2.bx.psu.edu/' --name 'Test Tool Shed' && \
  
positive.code:                        "--url http://testtoolshed.g2.bx.psu.edu/ -o galaxyp --name idpquery" \
                         "--url http://testtoolshed.g2.bx.psu.edu/ -o galaxyp --name msconvert" \
                         "--url http://testtoolshed.g2.bx.psu.edu/ -o galaxyp --name psm_to_sam" \
                         "--url http://toolshed.g2.bx.psu.edu/ -o devteam --name sam_to_bam" \
                         "--url http://toolshed.g2.bx.psu.edu/ -o devteam --name sam_merge"
  
  
negative.code:     apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 && \
      echo "deb http://ppa.launchpad.net/marutter/rdev/ubuntu $codename main" | tee -a /etc/apt/sources.list.d/marutter-rdev-$codename.list && \
      apt-get -qq update && \
      apt-get install -y --no-install-recommends r-base r-cran-rjson cabextract build-essential curl git m4 ruby texinfo libbz2-dev libcurl4-openssl-dev libxml2-dev libexpat-dev libncurses-dev zlib1g-dev libhdf5-dev python-h5py libreadline-dev && \
      sudo -u galaxy ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/linuxbrew/go/install)" && \
      echo export PATH=$PATH:/home/galaxy/.linuxbrew/bin >> /home/galaxy/.bashrc && \
      apt-get purge -y software-properties-common && \
  