anchor.diff:  	liburi-encode-perl \
   	libunicode-escape-perl \
   	libwww-perl \
  +	make 		\
   	python-biopython \
   	python-dev \
   	python-pip \ 					
  
positive.code:    	python-numpy \
  	python-scipy \
  	unzip \
  	wget 
  
  # ###########
  # copy files into image
  RUN mkdir -p mkdir -p /root/pipeline
  COPY mgrast_env.sh awecmd bin conf lib /root/pipeline/
  COPY usearch superblat /usr/local//bin/
  RUN chmod 555  /usr/local/bin/* && strip /usr/local/bin/*
  
  #### install superblat (from binary in local dir) and BLAT from src
  RUN cd /root \
  
negative.code: 	&& mv train bin/. \
  	&& mv *.pl bin/. \
  	&& install -s -m555 FragGeneScan bin/. \
  	&& make clean \
  	&& rm -rf example .git \
  	&& cd .. \
  	&& echo "export PATH=/root/FragGeneScan/bin:\$PATH" >> /root/mgrast_env.sh
  
  