anchor.diff:  ENV R_LIBS $OPT/R-lib
   ENV R_LIBS_USER $R_LIBS
   
  +RUN mkdir -p $OPT
  +COPY --from=builder $OPT $OPT
  +
   COPY scripts/analysisWGS.sh $OPT/bin/analysisWGS.sh
  -COPY scripts/ds-wrapper.pl $OPT/bin/ds-wrapper.pl
  -RUN chmod a+x $OPT/bin/analysisWGS.sh $OPT/bin/ds-wrapper.pl
  +COPY scripts/ds-cgpwgs.pl $OPT/bin/ds-cgpwgs.pl
  +RUN chmod a+x $OPT/bin/analysisWGS.sh $OPT/bin/ds-cgpwgs.pl
   
   USER    ubuntu
   WORKDIR /home/ubuntu
  
positive.code:   libncurses5\
    libcairo2\
    gfortran\
    libboost-all\
    libpstreams\
    r-base\
    libblas\
    exonerate
  
  RUN locale-gen en_US.UTF-8
  
negative.code: 
  MAINTAINER  keiranmraine@gmail.com
  
  LABEL vendor="Cancer Genome Project, Wellcome Trust Sanger Institute"
  LABEL uk.ac.sanger.cgp.description="CGP WGS pipeline for dockstore.org"
  LABEL uk.ac.sanger.cgp.version="2.0.0-rc1"
  
  RUN apt-get -yq update
  RUN apt-get install -yq --no-install-recommends\
  