   pinMode(WAL5, OUTPUT);
   pinMode(WAL6, OUTPUT);
   pinMode(WAL7, OUTPUT);  
-  GPIODATA(0) = 170;
 }
 
 void loop() {
   // put your main code here, to run repeatedly: 
-//  if (mySerial1.available()) {
-//   Serial.write(mySerial1.read()); 
-//  }
-//  if (Serial.available()) {
-//   mySerial1.write(Serial.read()); 
-//  }  
+
+  //This just puts a simple waveform up to capture.
   GPIODATA(0) = counter;
   counter++;
   if (counter >= 255)
     counter == 0;
 
-  Serial.println("Hello");
-  delay(1);
-
-  //bscanSerial.print("1");
-
 }

 
 In the case of using the JTAG Logic Analyzer you will need to run the network server that acts as the communication bridge between the Papilio and the Logic Analyzer client.
 The network server will make a connection with Channel A of the Papilio, which is connected to the JTAG port of the FPGA, and will forward all data to the Logic Analyzer client.
   1) Load the bit file:  sketchdir://LX9/papilio_pro.bit
   2) Start the JTAG server
     For Windows: tools://papilio-prog-jtag-server/papilio-prog-jtag-server.exe
     For Linux: Coming soon
   3) Start Logic Analyzer client:
     For Windows: tools://Logic_Analyzer.sh
     For Linux: Coming soon 
 
 If you want to modify the circuit then make sure you have Xilinx ISE Webpack installed and click on the appropriate link below to modify the schematic.
 If you do not have Xilinx ISE Webpack installed visit this tutorial to learn how. http://gadgetfactory.net/learn/2013/10/23/install-xilinxs-free-ise-webpack/

 Tutorials:
  
 Related library documentation:

   
 Hardware:
   
 Special Application Notes:
 Detailed notes for using the JTAG Logic Analyzer
 The network server will make a connection with Channel A of the Papilio, which is connected to the JTAG port of the FPGA, and will forward all data to the Logic Analyzer client.
   1) Load the bit file
   2) Start the JTAG server
     For Windows: tools://papilio-prog-jtag-server/papilio-prog-jtag-server.exe
     For Linux: Coming soon
   3) Start Logic Analyzer client:
     For Windows: tools://Logic_Analyzer.sh
     For Linux: Coming soon 
   4) In the OLS Capture Settings - Connection page set the following:
       a)Connection Type = Network
