anchor.diff:  		!note: TOTALREACTIONFLUX apparently tracks integrated flux, not
   		!instantaneous flux, so setting value to be zero here should be OK...
   		!in any case, the result doesn't seem to be used by the Java code
  -		DO I=1, EDGESPECIES
  +		DO I=1, ESPECIES
   		    IF (MAXRATIO(I) .GT. HIGHESTRATIO) THEN
   			HIGHESTRATIO = MAXRATIO(I)
   			ITER_OUTPT=0
  
positive.code:      &     CURRENTReactionFlux(REACTIONSIZE+THIRDBODYREACTIONSIZE+ &
       &     TROEREACTIONSIZE+LINDEREACTIONSIZE),&
       &     PREVReactionFlux(REACTIONSIZE+THIRDBODYREACTIONSIZE+&
       &     TROEREACTIONSIZE+LINDEREACTIONSIZE), PREVTIME
  
        EXTERNAL RES, JAC, GETFLUX
      ! 5/13/08 gmagoon: vars for timing
  
negative.code: 			!later; note that we cannot exit the do loop once the IF statement is
  			!caught because, even though output variables will be stored properly,
  			!the HIGHESTRATIO will not necessarily have the highest value
  			DO I=1, ESPECIES
  			    IF (MAXRATIO(I) .GT. HIGHESTRATIO) THEN
  				HIGHESTRATIO = MAXRATIO(I)
  				ITER_OUTPT=ITER
  