anchor.diff:  @ TESTS FOR REFERENCE
   [positive] Reference Registration,,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -j,dr dmel-all-chromosome-r6.06.cutted,.*"id":.+"name":"dmel-all-chromosome-r6.06.cutted".+"type":"FILE".+"format":"REFERENCE".*,
   [negative] Reference Registration {reference already registred},rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfa,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfa -j,dr testfa,,.*File with name 'testfa' already exists.*
  +[negative] Reference Registration {wrong format},,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa.gz -n testfa -j,,,.*ERROR.*You have provided genome data in a file which format isn't supported by the system.*
   [negative] Reference Registration {reference file does not exist},,rr $resourcePath/no_reference.fa -n no_ref -j,,,.*No such reference genome is found in the system.*
   [positive] Reference Registration {with -n option},,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfa -j,dr testfa,.*"id":.+"name":"testfa".+"type":"FILE".+"format":"REFERENCE".*,
   [positive] Reference Registration {with --pretty option},,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa --pretty tf -j,dr dmel-all-chromosome-r6.06.cutted,.*"id":.+"name":"dmel-all-chromosome-r6.06.cutted".+"prettyName":"tf".+"type":"FILE".+"format":"REFERENCE".*,
  
positive.code: [negative] Registration — no such file,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourcePath/no.bam?$resourcePath/no.bai,dr testfasta,,.+java.io.FileNotFoundException.+
  [negative] Registration — Unsupported format,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourcePath/CantonS.09-28.trim.dm606.realign_X_2L.bai,dr testfasta,,.+Unsupported file format.+
  [positive] VCF Registration,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourcePath/CantonS.09-28.trim_X.dm606.realign.vcf,df CantonS.09-28.trim_X.dm606.realign.vcf;dr testfasta,.*"id":.+."name":"CantonS.09-28.trim_X.dm606.realign.vcf"."bioDataItemId":.+."type":"FILE".+"format":"VCF".+,
  [positive] VCF Registration by relative path,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourceRelativePath/CantonS.09-28.trim_X.dm606.realign.vcf,df CantonS.09-28.trim_X.dm606.realign.vcf;dr testfasta,.*"id":.+."name":"CantonS.09-28.trim_X.dm606.realign.vcf"."bioDataItemId":.+."type":"FILE".+"format":"VCF".+,
  [positive] VCF Registration by name,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourcePath/CantonS.09-28.trim_X.dm606.realign.vcf -n vcffile,df vcffile;dr testfasta,.*"id":.+."name":"vcffile"."bioDataItemId":.+."type":"FILE".+"format":"VCF".+,
  [negative] VCF Registration with unexisting index,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourcePath/CantonS.09-28.trim_X.dm606.realign.vcf?$resourcePath/CantonS.09-28.trim_X.dm606.realign.vcf.tbi,dr testfasta,,.*An index is required. but none found.*
  [positive] VCF Registration no index with —no_index,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourcePath/CantonS.09-28.trim_X.dm606.realign.vcf -ni,df CantonS.09-28.trim_X.dm606.realign.vcf;dr testfasta,.*"id":.+."name":"CantonS.09-28.trim_X.dm606.realign.vcf"."bioDataItemId":.+."type":"FILE".+"format":"VCF".+,
  [positive] VCF Registration —pretty,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourcePath/CantonS.09-28.trim_X.dm606.realign.vcf -pt prettyvcf,df CantonS.09-28.trim_X.dm606.realign.vcf;dr testfasta,.+"prettyName":"prettyvcf".+,
  [positive] GTF Registration,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourcePath/dmel-all-r6.06.sorted.cutted.gtf,df dmel-all-r6.06.sorted.cutted.gtf;dr testfasta,.*"id":.+."name":"dmel-all-r6.06.sorted.cutted.gtf"."bioDataItemId":.+."type":"FILE".+"format":"GENE".+,
  [positive] GTF Registration by relative path,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourceRelativePath/dmel-all-r6.06.sorted.cutted.gtf,df dmel-all-r6.06.sorted.cutted.gtf;dr testfasta,.*"id":.+."name":"dmel-all-r6.06.sorted.cutted.gtf"."bioDataItemId":.+."type":"FILE".+"format":"GENE".+,
  [positive] GTF Registration by name,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourcePath/dmel-all-r6.06.sorted.cutted.gtf -n gtffile,df gtffile;dr testfasta,.*"id":.+."name":"gtffile"."bioDataItemId":.+."type":"FILE".+"format":"GENE".+,
  #FAILS [negative] GTF Registration with unexisting index,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourcePath/dmel-all-r6.06.sorted.cutted.gtf?$resourcePath/dmel-all-r6.06.sorted.cutted.gtf.tbi,df dmel-all-r6.06.sorted.cutted.gtf;dr testfasta,,.*Failed to find a file by name.*
  [positive] GTF Registration no index with —no_index,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourcePath/dmel-all-r6.06.sorted.cutted.gtf -ni,df dmel-all-r6.06.sorted.cutted.gtf;dr testfasta,.*"id":.+."name":"dmel-all-r6.06.sorted.cutted.gtf"."bioDataItemId":.+."type":"FILE".+"format":"GENE".+,
  [positive] GTF Registration —pretty,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta,rf -j testfasta $resourcePath/dmel-all-r6.06.sorted.cutted.gtf -pt prettygtf,df dmel-all-r6.06.sorted.cutted.gtf;dr testfasta,.+"prettyName":"prettygtf".+,
  
  @Deletion
  [positive] BAM deletion,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta;rf testfasta $resourcePath/CantonS.09-28.trim.dm606.realign_X_2L.bam?$resourcePath/CantonS.09-28.trim.dm606.realign_X_2L.bai,df -j CantonS.09-28.trim.dm606.realign_X_2L.bam ,dr testfasta,.*The file.+has been successfully unregistered,
  
negative.code: #FAILS (BUG) [positive] Search file {-l several files - search all},rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta;rf testfasta $resourcePath/CantonS.09-28.trim_X.dm606.realign.vcf;rf testfasta $resourcePath/dmel-all-r6.06.sorted.cutted.gtf,search -l 06,df CantonS.09-28.trim_X.dm606.realign.vcf;df dmel-all-r6.06.sorted.cutted.gtf;dr testfasta,,WAT?!
  [positive] Search file {-l several files - search all},rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta;rf testfasta $resourcePath/CantonS.09-28.trim_X.dm606.realign.vcf -n file1;rf testfasta $resourcePath/dmel-all-r6.06.sorted.cutted.gtf -n file2,search -l file,df file1;df file2;dr testfasta,."id":.+."name":"file1".*."id":.+."name":"file2".*
  [positive] Search file {-l several files - search not all},rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa -n testfasta;rf testfasta $resourcePath/CantonS.09-28.trim_X.dm606.realign.vcf -n fileone;rf testfasta $resourcePath/dmel-all-r6.06.sorted.cutted.gtf -n filetwo,search -l one,df fileone;df filetwo;dr testfasta,^((?!filetwo).)*$
  
  @Version
  [positive] Version,,version,,\d*\.\d*\.\d*
  [positive] Version short command,,v,,\d*\.\d*\.\d*
  [positive] Version with args (ignore input),,version /path/to/bam.bam,,\d*\.\d*\.\d*
  
  @SET SERVER
  [positive] Set server with right server format,,set_srv http://localhost:8081/catgenome,set_srv http://localhost:8080/catgenome,
  [positive] Set server (check that server is really changed),set_srv http://localhost:8081/catgenome,rr $resourcePath/dmel-all-chromosome-r6.06.cutted.fa,set_srv http://localhost:8080/catgenome,,.*ERROR.*Failed to execute a request.*
  [negative] Set server with wrong number of args,,set_srv http://localhost:8081/catgenome bam.bam,set_srv http://localhost:8080/catgenome,,.*ERROR.*Wrong number of arguments.*
  #FAILS [negative] Set server with wrong server format,,set_srv abra-cadabra,set_srv http://localhost:8080/catgenome,ERROR.*
  