anchor.diff:      "SNPtools" # requires IRanges, GenomicRanges, Biostrings, and Rsamtools
       "SOD" # depends on proprietary cudatoolkit
       "soilphysics" # requires rpanel
  +    "spacom" # requires nlopt
       "sparr" # requires spatstat
       "spatialsegregation" # requires spatstat
       "SpatialVx" # requires spatstat
       "speaq" # requires MassSpecWavelet
  +    "specificity" # requires nlopt
       "spocc" # requires leafletR
       "SQDA" # requires limma
  +    "ssizeRNA" # depends on missing 'Biobase', 'edgeR', 'limma', 'qvalue'
  +    "ssmrob" # requires nlopt
       "stagePop" # depends on broken PBSddesolve
       "statar" # depends on broken lfe
       "Statomica" # requires Biobase, multtest
  +    "stcm" # requires nlopt
  +    "stepp" # requires nlopt
       "stpp" # requires spatstat
       "structSSI" # requires multtest
       "strum" # requires Rgraphviz
       "superbiclust" # requires fabia
  +    "Surrogate" # Requires Nlopt
       "surveillance" # requires polyCub
  +    "survJamda" # depends on missing survcomp
       "swamp" # requires impute
  +    "switchr" # build is broken
  +    "switchrGist" # requires switchr
       "sybilSBML" # requires libSBML
  +    "systemfit" # requires nlopt
       "taxize" # requres bold
       "TcGSA" # requires multtest
  +    "TDMR" # REQUIRES NLOPT
  +    "tigerstats" # requires nlopt
  +    "timeSeq" # depends on missing edgeR
       "topologyGSA" # requires gRbase
       "TR8" # requres taxize
  +    "TriMatch" # Requires Nlopt
       "trip" # requires spatstat
       "TROM" # misses undeclared dependencies topGO', 'AnnotationDbi', 'GO.db'
       "ttScreening" # requires sva, and limma
  +    "userfriendlyscience" # requires nlopt
       "V8" # compilation error
  +    "VIMGUI" # REQUIRES NLOPT
  +    "VIM" # REQUIRES NLOPT
       "vmsbase" # depends on broken PBSmapping
       "vows" # requires rpanel
  +    "wfe" # requires nlopt
       "WGCNA" # requires impute
       "wgsea" # requires snpStats
       "WideLM" # depends on proprietary cudatoolkit
       "x_ent" # requires opencpu
  +    "xergm" # requires nlopt
  +    "xml2" # build is broken
  +    "ZeligMultilevel" # Requires Nlopt
  +    "zetadiv" # requires nlopt
       "zoib" # tarball is invalid on server
  -    "timeSeq" # depends on missing edgeR
  -    "survJamda" # depends on missing survcomp
  -    "ssizeRNA" # depends on missing 'Biobase', 'edgeR', 'limma', 'qvalue'
  -    "h5" # depends on missing h5 system library
     ];
   
     otherOverrides = old: new: {
  
positive.code:     "msSurv" # requires graph
      "muir" # requires DiagrammeR to build
      "multiDimBio" # requires pcaMethods
      "mutossGUI" # requires mutoss
      "mutoss" # requires multtest
      "MXM" # depends on broken gRbase
      "NBPSeq" # requires qvalue
      "NCmisc" # requires BiocInstaller
      "netClass" # requires samr
      "nettools" # requires WGCNA
      "netweavers" # requires BiocGenerics, Biobase, and limma
      "NLPutils" # requires qdap
      "NORRRM" # can't load SDMTools properly
      "NSA" # requires aroma_core
      "OpenCL" # FIXME: requires CL/opencl.h
      "optBiomarker" # requires rpanel
      "ora" # requires ROracle
      "orQA" # requires genefilter
      "PairViz" # requires graph
      "PANDA" # requires GO.db
      "ParDNAcopy" # requires DNAcopy
      "pathClass" # requires affy, and Biobase
      "PatternClass" # SDMTools.So: Undefined Symbol: X
      "pbdBASE" # requires pbdMPI
      "pbdDEMO" # requires pbdMPI
      "pbdDMAT" # requires pbdMPI
      "pbdSLAP" # requires pbdMPI
      "PBSddesolve" # fails its test suite for unclear reasons
      "PBSmapping" # fails its test suite for unclear reasons
      "pcaL1" # requires clp
      "pcalg" # requires graph, and RBGL
      "PCGSE" # requires safe
      "PCS" # requires multtest
      "PepPrep" # requires biomaRt
      "PerfMeas" # requires limma, graph, and RBGL
      "permGPU" # requires Biobase
      "PhViD" # requires LBE
      "pi0" # requires qvalue
      "plmDE" # requires limma
      "plsRcox" # requires survcomp
      "PMA" # requires impute
      "pmcgd" # depends on broken mixture
      "pmclust" # requires MPI running. HELP WANTED!
      "polyCub" # requires spatstat
      "ppiPre" # requires AnnotationDbi, GOSemSim, GO.db
      "pRF" # requires multtest
      "propOverlap" # requires Biobase
      "protiq" # requires graph, and RBGL
      "PSCBS" # requires DNAcopy
      "pubmed_mineR" # requires SSOAP
      "PubMedWordcloud" # requires GOsummaries
      "qdap" # requires gender
      "qtlnet" # requires pcalg
      "qtpaint" # can't find QtCore libraries
      "QuACN" # requires graph, RBGL
      "quanteda" # fails to build
      "QuasiSeq" # requires edgeR
      "RADami" # requires Biostrings
      "raincpc" # SDMTools.so: undefined symbol: X
      "rainfreq" # SDMTools.so: undefined symbol: X
      "RAM" # requires Heatplus
      "RapidPolygonLookup" # depends on broken PBSmapping
      "RAPIDR" # requires Biostrings, Rsamtools, and GenomicRanges
      "RbioRXN" # requires fmcsR, and KEGGREST
      "RcmdrPlugin_seeg" # requires seeg
      "Rcplex" # requires cplexAPI
      "RcppAPT" # configure script depends on /bin/sh
      "RcppRedis" # requires Hiredis
      "rDEA" # no such file or directory
      "RDieHarder" # requires libdieharder
      "reader" # requires NCmisc
      "REBayes" # requires Rmosek
      "RefFreeEWAS" # requires isva
      "retistruct" # depends on broken RImageJROI
      "rgp" # fails self-test
      "rgpui" # depends on broken rgp
      "RImageJROI" # requires spatstat
      "rjade" # requires V8 to build
      "rJPSGCS" # requires chopsticks
      "rLindo" # requires LINDO API
      "Rmosek" # requires mosek
      "RnavGraph" # requires graph, and RBGL
      "rneos" # requires XMLRPC
      "RNeXML" # requres taxize
      "RobLoxBioC" # requires Biobase
      "RobLox" # requires Biobase
      "RockFab" # requires EBImage
      "ROI_plugin_symphony" # depends on broken Rsymphony
      "ROracle" # requires OCI
      "rpanel" # I could not make Tcl to recognize BWidget. HELP WANTED!
      "RQuantLib" # requires QuantLib
      "RSAP" # requires SAPNWRFCSDK
      "RSeed" # requires RBGL, and graph
      "rsig" # requires survcomp
      "RSNPset" # requires qvalue
      "Rsymphony" # FIXME: requires SYMPHONY
      "RVideoPoker" # requires Rpanel
      "rysgran" # requires soiltexture
      "samr" # requires impute
      "SDD" # requires rpanel
      "seeg" # requires spatstat
      "selectspm" # depends on broken ecespa
      "semiArtificial" # requires RSNNS
      "SeqFeatR" # requires Biostrings, qvalue, and widgetTools
      "SeqGrapheR" # depends on Biostrings
      "sequenza" # requires copynumber
  
negative.code:     "SimRAD" # requires Biostrings, and ShortRead
      "SimSeq" # requires edgeR
      "siplab" # requires spatstat
      "sirt" # requires DiagrammeR to build
      "sjPlot" # requires nlopt
      "smart" # requires PMA
      "snpEnrichment" # requires snpStats
      "snplist" # requires biomaRt
  