def read(self, filename=None):
        """Read and parse index file *filename*."""
        self._init_filename(filename)

        data = odict()
        with open(self.real_filename) as ndx:
            current_section = None
            for line in ndx:
                line = line.strip()
                if len(line) == 0:
                    continue
                m = self.SECTION.match(line)
                if m:
                    current_section = m.group('name')
                    data[current_section] = []  # can fail if name not legal python key
                    continue
                if current_section is not None:
                    data[current_section].extend(map(int, line.split()))

        super(NDX,self).update(odict([(name, self._transform(atomnumbers))
                                     for name, atomnumbers in data.items()]))
def read(self, filename=None):
        """Read and parse index file *filename*."""
        self._init_filename(filename)

        data = odict()
        with open(self.real_filename) as ndx:
            current_section = None
            for line in ndx:
                line = line.strip()
                if len(line) == 0:
                    continue
                m = self.SECTION.match(line)
                if m:
                    current_section = m.group('name')
                    data[current_section] = []  # can fail if name not legal python key
                    continue
                if current_section is not None:
                    data[current_section].extend(map(int, line.split()))

        super(NDX,self).update(odict([(name, self._transform(atomnumbers))
                                     for name, atomnumbers in data.items()]))
def read ( self , filename = None ) : self . _init_filename ( filename ) data = odict ( ) with open ( self . real_filename ) as ndx : current_section = None for line in ndx : line = line . strip ( ) if len ( line ) == 0 : continue m = self . SECTION . match ( line ) if m : current_section = m . group ( 'name' ) data [ current_section ] = [ ] # can fail if name not legal python key continue if current_section is not None : data [ current_section ] . extend ( map ( int , line . split ( ) ) ) super ( NDX , self ) . update ( odict ( [ ( name , self . _transform ( atomnumbers ) ) for name , atomnumbers in data . items ( ) ] ) )
Read and parse index file *filename*.
Read and parse index file * filename * .