gseapy/__main__.py
def add_output_option(parser):
    """output option"""

    parser.add_argument("-o", "--outdir", dest="outdir", type=str, default='GSEApy_reports',
                        metavar='', action="store",
                        help="The GSEApy output directory. Default: the current working directory")
    parser.add_argument("-f", "--format", dest="format", type=str, metavar='', action="store",
                        choices=("pdf", "png", "jpeg", "eps", "svg"), default="pdf",
                        help="File extensions supported by Matplotlib active backend,\
                              choose from {'pdf', 'png', 'jpeg','ps', 'eps','svg'}. Default: 'pdf'.")
    parser.add_argument("--fs", "--figsize", action='store', nargs=2, dest='figsize',
                        metavar=('width', 'height'),type=float, default=(6.5, 6),
                        help="The figsize keyword argument need two parameters to define. Default: (6.5, 6)")
    parser.add_argument("--graph", dest = "graph", action="store", type=int, default=20, metavar='int',
                        help="Numbers of top graphs produced. Default: 20")
    parser.add_argument("--no-plot", action='store_true', dest='noplot', default=False,
                        help="Speed up computing by suppressing the plot output."+\
                             "This is useful only if data are interested. Default: False.")
    parser.add_argument("-v", "--verbose", action="store_true", default=False, dest='verbose',
                        help="Increase output verbosity, print out progress of your job", )
def add_output_option(parser):
    """output option"""

    parser.add_argument("-o", "--outdir", dest="outdir", type=str, default='GSEApy_reports',
                        metavar='', action="store",
                        help="The GSEApy output directory. Default: the current working directory")
    parser.add_argument("-f", "--format", dest="format", type=str, metavar='', action="store",
                        choices=("pdf", "png", "jpeg", "eps", "svg"), default="pdf",
                        help="File extensions supported by Matplotlib active backend,\
                              choose from {'pdf', 'png', 'jpeg','ps', 'eps','svg'}. Default: 'pdf'.")
    parser.add_argument("--fs", "--figsize", action='store', nargs=2, dest='figsize',
                        metavar=('width', 'height'),type=float, default=(6.5, 6),
                        help="The figsize keyword argument need two parameters to define. Default: (6.5, 6)")
    parser.add_argument("--graph", dest = "graph", action="store", type=int, default=20, metavar='int',
                        help="Numbers of top graphs produced. Default: 20")
    parser.add_argument("--no-plot", action='store_true', dest='noplot', default=False,
                        help="Speed up computing by suppressing the plot output."+\
                             "This is useful only if data are interested. Default: False.")
    parser.add_argument("-v", "--verbose", action="store_true", default=False, dest='verbose',
                        help="Increase output verbosity, print out progress of your job", )
def add_output_option ( parser ) : parser . add_argument ( "-o" , "--outdir" , dest = "outdir" , type = str , default = 'GSEApy_reports' , metavar = '' , action = "store" , help = "The GSEApy output directory. Default: the current working directory" ) parser . add_argument ( "-f" , "--format" , dest = "format" , type = str , metavar = '' , action = "store" , choices = ( "pdf" , "png" , "jpeg" , "eps" , "svg" ) , default = "pdf" , help = "File extensions supported by Matplotlib active backend,\
                              choose from {'pdf', 'png', 'jpeg','ps', 'eps','svg'}. Default: 'pdf'." ) parser . add_argument ( "--fs" , "--figsize" , action = 'store' , nargs = 2 , dest = 'figsize' , metavar = ( 'width' , 'height' ) , type = float , default = ( 6.5 , 6 ) , help = "The figsize keyword argument need two parameters to define. Default: (6.5, 6)" ) parser . add_argument ( "--graph" , dest = "graph" , action = "store" , type = int , default = 20 , metavar = 'int' , help = "Numbers of top graphs produced. Default: 20" ) parser . add_argument ( "--no-plot" , action = 'store_true' , dest = 'noplot' , default = False , help = "Speed up computing by suppressing the plot output." + "This is useful only if data are interested. Default: False." ) parser . add_argument ( "-v" , "--verbose" , action = "store_true" , default = False , dest = 'verbose' , help = "Increase output verbosity, print out progress of your job" , )
output option
output option