scout/build/hpo.py
def build_hpo_term(hpo_info):
    """Build a hpo_term object
    
    Check that the information is correct and add the correct hgnc ids to the 
    array of genes.
    
        Args:
            hpo_info(dict)
        
        Returns:
            hpo_obj(scout.models.HpoTerm): A dictionary with hpo information
    
    """
    
    try:
        hpo_id = hpo_info['hpo_id']
    except KeyError:
        raise KeyError("Hpo terms has to have a hpo_id")

    LOG.debug("Building hpo term %s", hpo_id)

    # Add description to HPO term
    try:
        description = hpo_info['description']
    except KeyError:
        raise KeyError("Hpo terms has to have a description")

    hpo_obj = HpoTerm(
        hpo_id = hpo_id,
        description = description
    )
    
    # Add links to hgnc genes if any
    hgnc_ids = hpo_info.get('genes', set())
    if hgnc_ids:
        hpo_obj['genes'] = list(hgnc_ids)
    
    return hpo_obj
def build_hpo_term(hpo_info):
    """Build a hpo_term object
    
    Check that the information is correct and add the correct hgnc ids to the 
    array of genes.
    
        Args:
            hpo_info(dict)
        
        Returns:
            hpo_obj(scout.models.HpoTerm): A dictionary with hpo information
    
    """
    
    try:
        hpo_id = hpo_info['hpo_id']
    except KeyError:
        raise KeyError("Hpo terms has to have a hpo_id")

    LOG.debug("Building hpo term %s", hpo_id)

    # Add description to HPO term
    try:
        description = hpo_info['description']
    except KeyError:
        raise KeyError("Hpo terms has to have a description")

    hpo_obj = HpoTerm(
        hpo_id = hpo_id,
        description = description
    )
    
    # Add links to hgnc genes if any
    hgnc_ids = hpo_info.get('genes', set())
    if hgnc_ids:
        hpo_obj['genes'] = list(hgnc_ids)
    
    return hpo_obj
def build_hpo_term ( hpo_info ) : try : hpo_id = hpo_info [ 'hpo_id' ] except KeyError : raise KeyError ( "Hpo terms has to have a hpo_id" ) LOG . debug ( "Building hpo term %s" , hpo_id ) # Add description to HPO term try : description = hpo_info [ 'description' ] except KeyError : raise KeyError ( "Hpo terms has to have a description" ) hpo_obj = HpoTerm ( hpo_id = hpo_id , description = description ) # Add links to hgnc genes if any hgnc_ids = hpo_info . get ( 'genes' , set ( ) ) if hgnc_ids : hpo_obj [ 'genes' ] = list ( hgnc_ids ) return hpo_obj
Build a hpo_term object
    
    Check that the information is correct and add the correct hgnc ids to the 
    array of genes.
    
        Args:
            hpo_info(dict)
        
        Returns:
            hpo_obj(scout.models.HpoTerm): A dictionary with hpo information
Build a hpo_term object Check that the information is correct and add the correct hgnc ids to the array of genes . Args : hpo_info ( dict ) Returns : hpo_obj ( scout . models . HpoTerm ) : A dictionary with hpo information