We focus on the challenging problem of efficient mouse 3D pose estimation based on static images, and especially single depth images. We introduce an approach to discriminatively train the split nodes of trees in random forest to improve their performance on estimation of 3D joint positions of mouse. Our algorithm is capable of working with different types of rodents and with different types of depth cameras and imaging setups. In particular, it is demonstrated in this paper that when a top-mounted depth camera is combined with a bottom-mounted color camera, the final system is capable of delivering full-body pose estimation including four limbs and the paws. Empirical examinations on synthesized and real-world depth images confirm the applicability of our approach on mouse pose estimation, as well as the closely related task of part-based labeling of mouse.
@cite_12: We present a novel method for analyzing social behavior. Continuous videos are segmented into action ‘bouts’ by building a temporal context model that combines features from spatio-temporal energy and agent trajectories. The method is tested on an unprecedented dataset of videos of interacting pairs of mice, which was collected as part of a state-of-the-art neurophysiological study of behavior. The dataset comprises over 88 hours (8 million frames) of annotated videos. We find that our novel trajectory features, used in a discriminative framework, are more informative than widely used spatio-temporal features; furthermore, temporal context plays an important role for action recognition in continuous videos. Our approach may be seen as a baseline method on this dataset, reaching a mean recognition rate of 61.2 compared to the expert's agreement rate of about 70 .
@cite_22: Local space-time features have recently become a popular video representation for action recognition. Several methods for feature localization and description have been proposed in the literature and promising recognition results were demonstrated for a number of action classes. The comparison of existing methods, however, is often limited given the different experimental settings used. The purpose of this paper is to evaluate and compare previously proposed space-time features in a common experimental setup. In particular, we consider four different feature detectors and six local feature descriptors and use a standard bag-of-features SVM approach for action recognition. We investigate the performance of these methods on a total of 25 action classes distributed over three datasets with varying difficulty. Among interesting conclusions, we demonstrate that regular sampling of space-time features consistently outperforms all tested space-time interest point detectors for human actions in realistic settings. We also demonstrate a consistent ranking for the majority of methods over different datasets and discuss their advantages and limitations.
@cite_3: Neurobehavioural analysis of mouse phenotypes requires the monitoring of mouse behaviour over long periods of time. In this study, we describe a trainable computer vision system enabling the automated analysis of complex mouse behaviours. We provide software and an extensive manually annotated video database used for training and testing the system. Our system performs on par with human scoring, as measured from ground-truth manual annotations of thousands of clips of freely behaving mice. As a validation of the system, we characterized the home-cage behaviours of two standard inbred and two non-standard mouse strains. From these data, we were able to predict in a blind test the strain identity of individual animals with high accuracy. Our video-based software will complement existing sensor-based automated approaches and enable an adaptable, comprehensive, high-throughput, fi ne-grained, automated analysis of mouse behaviour.
In behavior phenotyping, existing systems rely on discriminative learning methods such as SVM and conditional random fields (CRFs) @cite_22 @cite_3 @cite_12 that directly focus on classifying behaviours or interactions. These discriminative methods are usually supported by extracting visual features from 2D videos, such as spatio-temporal interest points (STIP) @cite_22 obtained by convolution of video sequence with filters designed to respond to salient points in the video volume, on which the visual bag-of-word features can be constructed. One key drawback is that these approaches are based on highly sophisticated features that are usually inscrutable by behavioral neuroscientists. This might lead to undesirable consequences when one tries to interpret the empirical findings, even if the classification performance is acceptable. An alternative scheme is to instead rely on single-frame based pose estimation, which is a lot easier for domain experts to understand and interpret.