@Test public void testExecute() throws IOException, SimpleMarshallerException, XPathExpressionException { String c32FileName = "MIE_SampleC32.xml"; String factmodelXml = fileReader.readFile(TEST_PATH + FACTMODEL_PATH + c32FileName); String c32 = embeddedClinicalDocumentExtractor.extractClinicalDocumentFromFactModel(factmodelXml); String ruleExecutionContainerXml = fileReader.readFile(TEST_PATH + RULEEXECUTIONCONTAINER_PATH + c32FileName); RuleExecutionContainer ruleExecutionContainer = marshaller.unmarshalFromXml(RuleExecutionContainer.class, ruleExecutionContainerXml); Document c32Document = documentXmlConverter.loadDocument(c32); Document factModelDocument = documentXmlConverter.loadDocument(factmodelXml); FactModel factModel = marshaller.unmarshalFromXml(FactModel.class, factmodelXml); List<Node> listOfNodes = new LinkedList<Node>(); Set<String> redactSectionCodesAndGeneratedEntryIds = new HashSet<String>(); Set<String> redactSensitiveCategoryCodes = new HashSet<String>(); ClinicalFact fact = factModel.getClinicalFactList().get(1); Set<String> valueSetCategories = new HashSet<String>(); valueSetCategories.add("HIV"); valueSetCategories.add("PSY"); fact.setValueSetCategories(valueSetCategories); sut.execute(c32Document, factModel.getXacmlResult(), factModel, factModelDocument, fact, ruleExecutionContainer, listOfNodes, redactSectionCodesAndGeneratedEntryIds, redactSensitiveCategoryCodes); assertEquals(1, listOfNodes.size()); assertEquals(1, redactSectionCodesAndGeneratedEntryIds.size()); assertEquals(1, redactSensitiveCategoryCodes.size()); assertEquals(Node.TEXT_NODE, listOfNodes.get(0).getNodeType()); assertEquals(" HEART RATE: 55bpm (2014-06-19 11:29:00)", listOfNodes.get(0).getNodeValue()); assertEquals("d1e133", redactSectionCodesAndGeneratedEntryIds.toArray()[0]); assertEquals("HIV", redactSensitiveCategoryCodes.toArray()[0]); }
@Override public void execute(Document xmlDocument, XacmlResult xacmlResult, FactModel factModel, Document factModelDocument, ClinicalFact fact, RuleExecutionContainer ruleExecutionContainer, List<Node> listOfNodes, Set<String> redactSectionCodesAndGeneratedEntryIds, Set<String> redactSensitiveCategoryCodes) throws XPathExpressionException { String displayName = fact.getDisplayName().toLowerCase(); if (!StringUtils.isBlank(displayName)) { String foundCategory = findMatchingCategory(xacmlResult, fact); if (foundCategory != null) { addNodesToList(xmlDocument, listOfNodes, redactSectionCodesAndGeneratedEntryIds, XPATH_HUMAN_READABLE_TEXT_NODE, fact.getEntry(), displayName); redactSensitiveCategoryCodes.add(foundCategory); } } }
HumanReadableTextNodeByDisplayName extends
		AbstractClinicalFactLevelRedactionHandler { @Override public void execute(Document xmlDocument, XacmlResult xacmlResult, FactModel factModel, Document factModelDocument, ClinicalFact fact, RuleExecutionContainer ruleExecutionContainer, List<Node> listOfNodes, Set<String> redactSectionCodesAndGeneratedEntryIds, Set<String> redactSensitiveCategoryCodes) throws XPathExpressionException { String displayName = fact.getDisplayName().toLowerCase(); if (!StringUtils.isBlank(displayName)) { String foundCategory = findMatchingCategory(xacmlResult, fact); if (foundCategory != null) { addNodesToList(xmlDocument, listOfNodes, redactSectionCodesAndGeneratedEntryIds, XPATH_HUMAN_READABLE_TEXT_NODE, fact.getEntry(), displayName); redactSensitiveCategoryCodes.add(foundCategory); } } } }
HumanReadableTextNodeByDisplayName extends
		AbstractClinicalFactLevelRedactionHandler { @Override public void execute(Document xmlDocument, XacmlResult xacmlResult, FactModel factModel, Document factModelDocument, ClinicalFact fact, RuleExecutionContainer ruleExecutionContainer, List<Node> listOfNodes, Set<String> redactSectionCodesAndGeneratedEntryIds, Set<String> redactSensitiveCategoryCodes) throws XPathExpressionException { String displayName = fact.getDisplayName().toLowerCase(); if (!StringUtils.isBlank(displayName)) { String foundCategory = findMatchingCategory(xacmlResult, fact); if (foundCategory != null) { addNodesToList(xmlDocument, listOfNodes, redactSectionCodesAndGeneratedEntryIds, XPATH_HUMAN_READABLE_TEXT_NODE, fact.getEntry(), displayName); redactSensitiveCategoryCodes.add(foundCategory); } } } HumanReadableTextNodeByDisplayName(DocumentAccessor documentAccessor); }
HumanReadableTextNodeByDisplayName extends
		AbstractClinicalFactLevelRedactionHandler { @Override public void execute(Document xmlDocument, XacmlResult xacmlResult, FactModel factModel, Document factModelDocument, ClinicalFact fact, RuleExecutionContainer ruleExecutionContainer, List<Node> listOfNodes, Set<String> redactSectionCodesAndGeneratedEntryIds, Set<String> redactSensitiveCategoryCodes) throws XPathExpressionException { String displayName = fact.getDisplayName().toLowerCase(); if (!StringUtils.isBlank(displayName)) { String foundCategory = findMatchingCategory(xacmlResult, fact); if (foundCategory != null) { addNodesToList(xmlDocument, listOfNodes, redactSectionCodesAndGeneratedEntryIds, XPATH_HUMAN_READABLE_TEXT_NODE, fact.getEntry(), displayName); redactSensitiveCategoryCodes.add(foundCategory); } } } HumanReadableTextNodeByDisplayName(DocumentAccessor documentAccessor); @Override void execute(Document xmlDocument, XacmlResult xacmlResult,
			FactModel factModel, Document factModelDocument, ClinicalFact fact,
			RuleExecutionContainer ruleExecutionContainer,
			List<Node> listOfNodes,
			Set<String> redactSectionCodesAndGeneratedEntryIds,
			Set<String> redactSensitiveCategoryCodes); }
HumanReadableTextNodeByDisplayName extends
		AbstractClinicalFactLevelRedactionHandler { @Override public void execute(Document xmlDocument, XacmlResult xacmlResult, FactModel factModel, Document factModelDocument, ClinicalFact fact, RuleExecutionContainer ruleExecutionContainer, List<Node> listOfNodes, Set<String> redactSectionCodesAndGeneratedEntryIds, Set<String> redactSensitiveCategoryCodes) throws XPathExpressionException { String displayName = fact.getDisplayName().toLowerCase(); if (!StringUtils.isBlank(displayName)) { String foundCategory = findMatchingCategory(xacmlResult, fact); if (foundCategory != null) { addNodesToList(xmlDocument, listOfNodes, redactSectionCodesAndGeneratedEntryIds, XPATH_HUMAN_READABLE_TEXT_NODE, fact.getEntry(), displayName); redactSensitiveCategoryCodes.add(foundCategory); } } } HumanReadableTextNodeByDisplayName(DocumentAccessor documentAccessor); @Override void execute(Document xmlDocument, XacmlResult xacmlResult,
			FactModel factModel, Document factModelDocument, ClinicalFact fact,
			RuleExecutionContainer ruleExecutionContainer,
			List<Node> listOfNodes,
			Set<String> redactSectionCodesAndGeneratedEntryIds,
			Set<String> redactSensitiveCategoryCodes); static final String XPATH_HUMAN_READABLE_TEXT_NODE; }