@Test public void save() throws Exception { workflowReportJson.save(wfReport, dataBundle); Path path = wfReport.getDataBundle().getRoot().resolve("/workflowrun.json"); assertTrue("Did not save to expected path " + path, Files.exists(path)); JsonNode json; try (InputStream jsonIn = Files.newInputStream(path)) { json = new ObjectMapper().readTree(jsonIn); } assertEquals("COMPLETED", json.get("state").asText()); assertEquals("2013-01-02T13:37:00.000+0000", json.get("createdDate").asText()); assertEquals("2013-01-02T14:50:00.000+0000", json.get("startedDate").asText()); assertEquals("2013-12-31T00:00:00.000+0000", json.get("completedDate").asText()); String wfId = wfBundle.getGlobalBaseURI().toString(); assertEquals(wfId + "workflow/Hello_Anyone/", json.get("subject").asText()); JsonNode wfInvoc = json.get("invocations").get(0); assertEquals("wf0", wfInvoc.get("id").asText()); assertEquals("wf0", wfInvoc.get("name").asText()); assertEquals("2013-01-02T14:51:00.000+0000", wfInvoc.get("startedDate").asText()); assertEquals("2013-12-30T23:50:00.000+0000", wfInvoc.get("completedDate").asText()); String inputsName = wfInvoc.get("inputs").get("name").asText(); assertEquals("/inputs/name", inputsName); String outputsGreeting = wfInvoc.get("outputs").get("greeting").asText(); assertEquals("/outputs/greeting", outputsGreeting); assertEquals( "John Doe", DataBundles.getStringValue(wfReport.getDataBundle().getRoot() .resolve(inputsName))); assertEquals( "Hello, John Doe", DataBundles.getStringValue(wfReport.getDataBundle().getRoot() .resolve(outputsGreeting))); JsonNode proc0 = json.get("processorReports").get(0); assertEquals(wfId + "workflow/Hello_Anyone/processor/Concatenate_two_strings/", proc0.get("subject").asText()); assertEquals("COMPLETED", proc0.get("state").asText()); assertEquals("2013-02-01T00:00:00.000+0000", proc0.get("createdDate").asText()); assertEquals("2013-02-02T00:00:00.000+0000", proc0.get("startedDate").asText()); assertEquals("2013-02-03T00:00:00.000+0000", proc0.get("pausedDates").get(0).asText()); assertEquals("2013-02-05T00:00:00.000+0000", proc0.get("pausedDates").get(1).asText()); assertEquals("2013-02-05T00:00:00.000+0000", proc0.get("pausedDate").asText()); assertEquals("2013-02-04T00:00:00.000+0000", proc0.get("resumedDates").get(0).asText()); assertEquals("2013-02-06T00:00:00.000+0000", proc0.get("resumedDates").get(1).asText()); assertEquals("2013-02-06T00:00:00.000+0000", proc0.get("resumedDate").asText()); assertEquals("2013-07-28T12:00:00.000+0000", proc0.get("completedDate").asText()); JsonNode pInvoc0 = proc0.get("invocations").get(0); assertEquals("proc-Concatenate_two_strings0", pInvoc0.get("name").asText()); assertEquals("wf0/proc-Concatenate_two_strings0", pInvoc0.get("id").asText()); assertEquals("wf0", pInvoc0.get("parent").asText()); String inputString1 = pInvoc0.get("inputs").get("string1").asText(); assertTrue(inputString1.startsWith("/intermediates/")); assertEquals( "Hello, ", DataBundles.getStringValue(wfReport.getDataBundle().getRoot() .resolve(inputString1))); String inputString2 = pInvoc0.get("inputs").get("string2").asText(); assertEquals("/inputs/name", inputString2); String output = pInvoc0.get("outputs").get("output").asText(); assertTrue(output.startsWith("/intermediates/")); assertEquals( "Hello, John Doe", DataBundles.getStringValue(wfReport.getDataBundle().getRoot() .resolve(output))); JsonNode act0 = proc0.get("activityReports").get(0); assertEquals("CANCELLED", act0.get("state").asText()); assertEquals(wfId + "profile/taverna-2.4.0/activity/Concatenate_two_strings/", act0.get("subject").asText()); JsonNode aInvoc0 = act0.get("invocations").get(0); assertEquals("act-Concatenate_two_strings0", aInvoc0.get("name").asText()); assertEquals("wf0/proc-Concatenate_two_strings0/act-Concatenate_two_strings0", aInvoc0.get("id").asText()); assertEquals("wf0/proc-Concatenate_two_strings0", aInvoc0.get("parent").asText()); String actInputString1 = aInvoc0.get("inputs").get("string1").asText(); assertTrue(actInputString1.startsWith("/intermediates/")); assertEquals( "Hello, ", DataBundles.getStringValue(wfReport.getDataBundle().getRoot() .resolve(actInputString1))); String actInputString2 = aInvoc0.get("inputs").get("string2").asText(); assertEquals("/inputs/name", actInputString2); String actOutput = pInvoc0.get("outputs").get("output").asText(); assertTrue(actOutput.startsWith("/intermediates/")); assertEquals( "Hello, John Doe", DataBundles.getStringValue(wfReport.getDataBundle().getRoot() .resolve(actOutput))); JsonNode proc1 = json.get("processorReports").get(1); assertEquals(wfId + "workflow/Hello_Anyone/processor/hello/", proc1.get("subject").asText()); assertEquals("COMPLETED", proc1.get("state").asText()); assertEquals("2013-02-01T00:00:00.000+0000", proc1.get("createdDate").asText()); assertEquals("2013-02-02T00:00:00.000+0000", proc1.get("startedDate").asText()); JsonNode pInvoc1 = proc1.get("invocations").get(0); String value = pInvoc1.get("outputs").get("value").asText(); assertTrue(value.startsWith("/intermediates/")); assertEquals( "Hello, ", DataBundles.getStringValue(wfReport.getDataBundle().getRoot() .resolve(value))); assertEquals(inputString1, value); }
public void save(WorkflowReport wfReport, Path path) throws IOException { ObjectMapper om = makeObjectMapperForSave(); try (Writer w = newBufferedWriter(path, Charset.forName("UTF-8"), WRITE, CREATE, TRUNCATE_EXISTING)) { om.writeValue(w, wfReport); } }
WorkflowReportJSON { public void save(WorkflowReport wfReport, Path path) throws IOException { ObjectMapper om = makeObjectMapperForSave(); try (Writer w = newBufferedWriter(path, Charset.forName("UTF-8"), WRITE, CREATE, TRUNCATE_EXISTING)) { om.writeValue(w, wfReport); } } }
WorkflowReportJSON { public void save(WorkflowReport wfReport, Path path) throws IOException { ObjectMapper om = makeObjectMapperForSave(); try (Writer w = newBufferedWriter(path, Charset.forName("UTF-8"), WRITE, CREATE, TRUNCATE_EXISTING)) { om.writeValue(w, wfReport); } }  }
WorkflowReportJSON { public void save(WorkflowReport wfReport, Path path) throws IOException { ObjectMapper om = makeObjectMapperForSave(); try (Writer w = newBufferedWriter(path, Charset.forName("UTF-8"), WRITE, CREATE, TRUNCATE_EXISTING)) { om.writeValue(w, wfReport); } }  void save(WorkflowReport wfReport, Path path); void save(WorkflowReport wfReport, Bundle dataBundle); WorkflowReport load(Bundle bundle); WorkflowReport load(Path workflowReportJson,
			WorkflowBundle workflowBundle); }
WorkflowReportJSON { public void save(WorkflowReport wfReport, Path path) throws IOException { ObjectMapper om = makeObjectMapperForSave(); try (Writer w = newBufferedWriter(path, Charset.forName("UTF-8"), WRITE, CREATE, TRUNCATE_EXISTING)) { om.writeValue(w, wfReport); } }  void save(WorkflowReport wfReport, Path path); void save(WorkflowReport wfReport, Bundle dataBundle); WorkflowReport load(Bundle bundle); WorkflowReport load(Path workflowReportJson,
			WorkflowBundle workflowBundle);  }