@Test public void addUnknownTopology() { Topology t = Topology.unknown(); Graph g = new Graph(5); g.addTopology(t); }
void addTopology(Topology t) { if (t != null && t != Topology.unknown()) topologies[t.atom()] = t; }
Graph { void addTopology(Topology t) { if (t != null && t != Topology.unknown()) topologies[t.atom()] = t; } }
Graph { void addTopology(Topology t) { if (t != null && t != Topology.unknown()) topologies[t.atom()] = t; } Graph(int expSize);   Graph(Graph org); }
Graph { void addTopology(Topology t) { if (t != null && t != Topology.unknown()) topologies[t.atom()] = t; } Graph(int expSize);   Graph(Graph org); Atom atom(int i); int degree(int u); List<Edge> edges(int u); int[] neighbors(int u); boolean adjacent(int u, int v); int implHCount(int u); Edge edge(int u, int v); Edge edgeAt(int u, int j); Topology topologyOf(int u); Configuration configurationOf(int u); int order(); int size(); static Graph fromSmiles(String smi); static Graph parse(String smi, boolean strict, Set<String> warnings); String toSmiles(); String toSmiles(int[] visitedAt); Graph aromatic(); Graph resonate(); Graph kekule(); boolean assignable(); Graph permute(int[] p); Iterable<Atom> atoms(); Iterable<Edge> edges(); int getFlags(final int mask); int getFlags(); void setTitle(String title); String getTitle(); Graph sort(EdgeComparator comparator); }
Graph { void addTopology(Topology t) { if (t != null && t != Topology.unknown()) topologies[t.atom()] = t; } Graph(int expSize);   Graph(Graph org); Atom atom(int i); int degree(int u); List<Edge> edges(int u); int[] neighbors(int u); boolean adjacent(int u, int v); int implHCount(int u); Edge edge(int u, int v); Edge edgeAt(int u, int j); Topology topologyOf(int u); Configuration configurationOf(int u); int order(); int size(); static Graph fromSmiles(String smi); static Graph parse(String smi, boolean strict, Set<String> warnings); String toSmiles(); String toSmiles(int[] visitedAt); Graph aromatic(); Graph resonate(); Graph kekule(); boolean assignable(); Graph permute(int[] p); Iterable<Atom> atoms(); Iterable<Edge> edges(); int getFlags(final int mask); int getFlags(); void setTitle(String title); String getTitle(); Graph sort(EdgeComparator comparator); static final int HAS_AROM; static final int HAS_ATM_STRO; static final int HAS_EXT_STRO; static final int HAS_BND_STRO; static final int HAS_STRO; }