@Test public void testFindGSE267() { Collection<String> result = DatasetCombiner.findGDSforGSE( "GSE267" ); assertEquals( 0, result.size() ); }
public static Collection<String> findGDSforGSE( Collection<String> seriesAccessions ) { Collection<String> associatedDatasetAccessions = new HashSet<>(); for ( String seriesAccession : seriesAccessions ) { associatedDatasetAccessions.addAll( DatasetCombiner.findGDSforGSE( seriesAccession ) ); } return associatedDatasetAccessions; }
DatasetCombiner { public static Collection<String> findGDSforGSE( Collection<String> seriesAccessions ) { Collection<String> associatedDatasetAccessions = new HashSet<>(); for ( String seriesAccession : seriesAccessions ) { associatedDatasetAccessions.addAll( DatasetCombiner.findGDSforGSE( seriesAccession ) ); } return associatedDatasetAccessions; } }
DatasetCombiner { public static Collection<String> findGDSforGSE( Collection<String> seriesAccessions ) { Collection<String> associatedDatasetAccessions = new HashSet<>(); for ( String seriesAccession : seriesAccessions ) { associatedDatasetAccessions.addAll( DatasetCombiner.findGDSforGSE( seriesAccession ) ); } return associatedDatasetAccessions; } DatasetCombiner();  DatasetCombiner( boolean doSampleMatching ); }
DatasetCombiner { public static Collection<String> findGDSforGSE( Collection<String> seriesAccessions ) { Collection<String> associatedDatasetAccessions = new HashSet<>(); for ( String seriesAccession : seriesAccessions ) { associatedDatasetAccessions.addAll( DatasetCombiner.findGDSforGSE( seriesAccession ) ); } return associatedDatasetAccessions; } DatasetCombiner();  DatasetCombiner( boolean doSampleMatching ); static Collection<String> findGDSforGSE( Collection<String> seriesAccessions ); static Collection<String> findGDSforGSE( String seriesAccession ); static Collection<String> findGSEforGDS( String datasetAccession ); static Map<GeoPlatform, List<GeoSample>> getPlatformSampleMap( GeoSeries geoSeries ); Collection<String> findGDSforGDS( String datasetAccession ); GeoSampleCorrespondence findGSECorrespondence( Collection<GeoDataset> dataSets ); GeoSampleCorrespondence findGSECorrespondence( GeoSeries series ); }
DatasetCombiner { public static Collection<String> findGDSforGSE( Collection<String> seriesAccessions ) { Collection<String> associatedDatasetAccessions = new HashSet<>(); for ( String seriesAccession : seriesAccessions ) { associatedDatasetAccessions.addAll( DatasetCombiner.findGDSforGSE( seriesAccession ) ); } return associatedDatasetAccessions; } DatasetCombiner();  DatasetCombiner( boolean doSampleMatching ); static Collection<String> findGDSforGSE( Collection<String> seriesAccessions ); static Collection<String> findGDSforGSE( String seriesAccession ); static Collection<String> findGSEforGDS( String datasetAccession ); static Map<GeoPlatform, List<GeoSample>> getPlatformSampleMap( GeoSeries geoSeries ); Collection<String> findGDSforGDS( String datasetAccession ); GeoSampleCorrespondence findGSECorrespondence( Collection<GeoDataset> dataSets ); GeoSampleCorrespondence findGSECorrespondence( GeoSeries series );  }