@Test public void testIndelLineChrom3() throws VCFParseException { VCFLine line = new VCFLine(indelLine1); String r = line.get_reference_sequence(); Assert.assertEquals("-", r); }
public String get_reference_sequence() { return this.ref; }
VCFLine { public String get_reference_sequence() { return this.ref; } }
VCFLine { public String get_reference_sequence() { return this.ref; } VCFLine(String line); }
VCFLine { public String get_reference_sequence() { return this.ref; } VCFLine(String line); byte get_chromosome(); int get_position(); String get_reference_sequence(); String get_alternate_sequence(); GenotypeCall getGenotype(); float getVariantPhredScore(); static void setStoreVCFLines(); static void unsetStoreVCFLines(); static void setGenotypeFactory(GenotypeFactoryA fac); Variant toVariant(); void convertToAnnovar(); byte convertChromosomeStringToByteValue(String c); String getOriginalVCFLine(); }
VCFLine { public String get_reference_sequence() { return this.ref; } VCFLine(String line); byte get_chromosome(); int get_position(); String get_reference_sequence(); String get_alternate_sequence(); GenotypeCall getGenotype(); float getVariantPhredScore(); static void setStoreVCFLines(); static void unsetStoreVCFLines(); static void setGenotypeFactory(GenotypeFactoryA fac); Variant toVariant(); void convertToAnnovar(); byte convertChromosomeStringToByteValue(String c); String getOriginalVCFLine();  }