@Test public void testIndelLineChrom1() throws VCFParseException { VCFLine line = new VCFLine(indelLine1); Assert.assertEquals((byte) 1, line.get_chromosome()); }
public byte get_chromosome() { return this.chromosome; }
VCFLine { public byte get_chromosome() { return this.chromosome; } }
VCFLine { public byte get_chromosome() { return this.chromosome; } VCFLine(String line); }
VCFLine { public byte get_chromosome() { return this.chromosome; } VCFLine(String line); byte get_chromosome(); int get_position(); String get_reference_sequence(); String get_alternate_sequence(); GenotypeCall getGenotype(); float getVariantPhredScore(); static void setStoreVCFLines(); static void unsetStoreVCFLines(); static void setGenotypeFactory(GenotypeFactoryA fac); Variant toVariant(); void convertToAnnovar(); byte convertChromosomeStringToByteValue(String c); String getOriginalVCFLine(); }
VCFLine { public byte get_chromosome() { return this.chromosome; } VCFLine(String line); byte get_chromosome(); int get_position(); String get_reference_sequence(); String get_alternate_sequence(); GenotypeCall getGenotype(); float getVariantPhredScore(); static void setStoreVCFLines(); static void unsetStoreVCFLines(); static void setGenotypeFactory(GenotypeFactoryA fac); Variant toVariant(); void convertToAnnovar(); byte convertChromosomeStringToByteValue(String c); String getOriginalVCFLine();  }