@Test public void testFileRegistrationConstructor() { AbstractHTTPCommandHandler outerHandler = createFileRegCommandHandler(serverParameters, COMMAND); FileRegistrationHandler handler = new FileRegistrationHandler(PATH_TO_VCF, REF_ID, outerHandler, new ApplicationOptions()); assertEquals(RUN_STATUS_OK, handler.runCommand()); }
@Override public int runCommand() { List<BiologicalDataItem> items = registerItems(); if (!items.isEmpty() && (printJson || printTable)) { AbstractResultPrinter printer = AbstractResultPrinter .getPrinter(printTable, items.get(0).getFormatString(items)); printer.printHeader(items.get(0)); items.forEach(printer::printItem); } return items.size() != files.size() ? 1 : 0; }
FileRegistrationHandler extends AbstractHTTPCommandHandler { @Override public int runCommand() { List<BiologicalDataItem> items = registerItems(); if (!items.isEmpty() && (printJson || printTable)) { AbstractResultPrinter printer = AbstractResultPrinter .getPrinter(printTable, items.get(0).getFormatString(items)); printer.printHeader(items.get(0)); items.forEach(printer::printItem); } return items.size() != files.size() ? 1 : 0; } }
FileRegistrationHandler extends AbstractHTTPCommandHandler { @Override public int runCommand() { List<BiologicalDataItem> items = registerItems(); if (!items.isEmpty() && (printJson || printTable)) { AbstractResultPrinter printer = AbstractResultPrinter .getPrinter(printTable, items.get(0).getFormatString(items)); printer.printHeader(items.get(0)); items.forEach(printer::printItem); } return items.size() != files.size() ? 1 : 0; } FileRegistrationHandler();  FileRegistrationHandler(String path, Long referenceId,
            AbstractHTTPCommandHandler handler, ApplicationOptions options); }
FileRegistrationHandler extends AbstractHTTPCommandHandler { @Override public int runCommand() { List<BiologicalDataItem> items = registerItems(); if (!items.isEmpty() && (printJson || printTable)) { AbstractResultPrinter printer = AbstractResultPrinter .getPrinter(printTable, items.get(0).getFormatString(items)); printer.printHeader(items.get(0)); items.forEach(printer::printItem); } return items.size() != files.size() ? 1 : 0; } FileRegistrationHandler();  FileRegistrationHandler(String path, Long referenceId,
            AbstractHTTPCommandHandler handler, ApplicationOptions options); @Override void parseAndVerifyArguments(List<String> arguments, ApplicationOptions options); @Override int runCommand(); }
FileRegistrationHandler extends AbstractHTTPCommandHandler { @Override public int runCommand() { List<BiologicalDataItem> items = registerItems(); if (!items.isEmpty() && (printJson || printTable)) { AbstractResultPrinter printer = AbstractResultPrinter .getPrinter(printTable, items.get(0).getFormatString(items)); printer.printHeader(items.get(0)); items.forEach(printer::printItem); } return items.size() != files.size() ? 1 : 0; } FileRegistrationHandler();  FileRegistrationHandler(String path, Long referenceId,
            AbstractHTTPCommandHandler handler, ApplicationOptions options); @Override void parseAndVerifyArguments(List<String> arguments, ApplicationOptions options); @Override int runCommand();  }