@Test public void testSampleNameList() { ArrayList<String> sampleList = reader.getSampleNames(); int N = sampleList.size(); Assert.assertEquals(6,N); String sampl2 = sampleList.get(1); Assert.assertEquals("Mentalist02_dup",sampl2); }
public ArrayList<String> getSampleNames(){ return this.sample_name_list; }
VCFReader { public ArrayList<String> getSampleNames(){ return this.sample_name_list; } }
VCFReader { public ArrayList<String> getSampleNames(){ return this.sample_name_list; } VCFReader(String vcfPath);  VCFReader(BufferedReader br); }
VCFReader { public ArrayList<String> getSampleNames(){ return this.sample_name_list; } VCFReader(String vcfPath);  VCFReader(BufferedReader br); int get_total_number_of_variants(); int getNumberOfSamples(); String getVCFFileName(); Iterator<Variant> getVariantIterator(); Iterator<VCFLine> getVCFLineIterator(); ArrayList<Variant> getVariantList(); Variant VCFline2Variant(VCFLine line); ArrayList<String> getSampleNames(); ArrayList<String> getListOfUnparsableLines(); ArrayList<String> get_vcf_header(); ArrayList<String> getAnnotatedVCFHeader(); ArrayList<String> get_html_message(); void parseFile(); void parse_chrom_line(String line); void inputVCFheader(); void printWarnings(); }
VCFReader { public ArrayList<String> getSampleNames(){ return this.sample_name_list; } VCFReader(String vcfPath);  VCFReader(BufferedReader br); int get_total_number_of_variants(); int getNumberOfSamples(); String getVCFFileName(); Iterator<Variant> getVariantIterator(); Iterator<VCFLine> getVCFLineIterator(); ArrayList<Variant> getVariantList(); Variant VCFline2Variant(VCFLine line); ArrayList<String> getSampleNames(); ArrayList<String> getListOfUnparsableLines(); ArrayList<String> get_vcf_header(); ArrayList<String> getAnnotatedVCFHeader(); ArrayList<String> get_html_message(); void parseFile(); void parse_chrom_line(String line); void inputVCFheader(); void printWarnings(); static final int FORMAT_GENOTYPE; static final int FORMAT_GENOTYPE_QUALITY; static final int FORMAT_LIKELIHOODS; static final int FORMAT_HIGH_QUALITY_BASES; static final int FORMAT_PHRED_STRAND_BIAS; static final int FORMAT_PHRED_GENOTYPE_LIKELIHOODS; }