@Test public void testIsGenotype() { VCFLine line = VCFLineList.get(2); GenotypeCall GI = line.getGenotype(); String gt = GI.get_genotype_as_string(); Assert.assertEquals("0/1", gt); }
public GenotypeCall getGenotype() { return this.gtype; }
VCFLine { public GenotypeCall getGenotype() { return this.gtype; } }
VCFLine { public GenotypeCall getGenotype() { return this.gtype; } VCFLine(String line); }
VCFLine { public GenotypeCall getGenotype() { return this.gtype; } VCFLine(String line); byte get_chromosome(); int get_position(); String get_reference_sequence(); String get_alternate_sequence(); GenotypeCall getGenotype(); float getVariantPhredScore(); static void setStoreVCFLines(); static void unsetStoreVCFLines(); static void setGenotypeFactory(GenotypeFactoryA fac); Variant toVariant(); void convertToAnnovar(); byte convertChromosomeStringToByteValue(String c); String getOriginalVCFLine(); }
VCFLine { public GenotypeCall getGenotype() { return this.gtype; } VCFLine(String line); byte get_chromosome(); int get_position(); String get_reference_sequence(); String get_alternate_sequence(); GenotypeCall getGenotype(); float getVariantPhredScore(); static void setStoreVCFLines(); static void unsetStoreVCFLines(); static void setGenotypeFactory(GenotypeFactoryA fac); Variant toVariant(); void convertToAnnovar(); byte convertChromosomeStringToByteValue(String c); String getOriginalVCFLine();  }