Bobbin tool friction stir welding (BTFSW) is a relatively new, solid-state welding technology, but its control is not the same as the conventional friction stir welding (FSW) due to the unique welding tool structure. In this paper, closed-loop control system was developed and the Smith predictive proportional-integral-derivative (PID) control method was presented to assist the welding system in producing an appropriate interface temperature response. As it is difficult to accurately detect the temperature in full range of the welding zone, the tool-workpiece interface temperature is detected by thermocouple and wireless transmission technology. Initial experiments were conducted to derive a qualitative understanding of bobbin tool friction stir welding processes. Ziegler-Nichols setting method was adopted to determine parameters of the PID controller. While examining the capabilities of Smith predictive PID control in BTFSW, this paper focuses on the control effect of hysteretic characteristics of welding temperature during butt welding. A compensation strategy was setting gaps along the welding path, and the gap could affect the distribution of temperature. Through our experiments, we demonstrate that temperature control strategy is feasible, and the tensile properties of the weld are uniform along the welding direction.