Fractional order Proportional-Integral-Derivative (PID) controller is composed of a number of integer order PID controllers. It is more accurate to control the complex system than the traditional integer order PID controller. The values of parameters of the fractional order PID controller play a decisive role for the control effect. Because the fractional order PID controller added two adjustable parameters than the traditional PID controller, it is very difficult to tune parameters. So the Back Propagation (BP) neural network is selected to optimize the parameters of the fractional order PID controller in order to obtain the high performance. Then the optimized fractional order PID controller and the traditional PID controller are used to control AC motor speed governing system. And the vibration spectrum and stator current spectrum under different rotating speeds are compared and analyzed in detail. The results show that the optimized fractional order PID controller has better vibration suppression performance than the traditional PID controller. The reason is that the optimized fractional order PID controller changed the stator current component, and further changed the frequency components and the amplitude of the vibration signal of the motor.