Consumption of "gluten-containing" diet causes disease for a significant minority of people who consume foods derived from wheat, rye, barley, and possibly oat. The fact is, however, that in several types of diseases related to the consumption of "gluten-containing" cereals, the trigger compounds are not components of gluten. The current view of medical experts is that, excluding people suffering from celiac disease, the majority of individuals who are feeling better on the "wheat-free" or "gluten-free" diet could select a food containing much healthier, low level of fermentable oligosaccharides (often called as FODMAP). To satisfy the specific health related demands of certain consumer groups, the challenge is in front of cereal breeding to develop new, "healthier" germplasms, suitable to produce such products by the food industry. This report aims to give an overview of some aspects of recent developments in this booming area, (i) summarizing the up-to-date knowledge on cereals-related health disorders; (ii) reporting on the status of developing celiac-safe cereals, and finally (iii) highlighting the potential of developing "healthier" spelt-based cereal products through the progress in an ongoing spelt breeding program.