The decline of species richness with altitude is one of the most obvious patterns in ecology and results from the combination of ecological and evolutionary mechanisms. In harsh high-altitude environments, the effect of altitude usually overrules other environmental variables related to biodiversity. Studies using species richness along altitude gradients in high altitude are relatively numerous for lakes, but not for ponds. However, due to their special features, such as small size, high isolation and regional variability, ponds have been proved to be different systems compared to lakes. In high-altitude waterbodies, species of the family Chironomidae often dominate in benthic invertebrate communities and thus serve as an ideal model to study aquatic community changes along an altitude gradient. However, due to the time-consuming processing and expertise needed to identify the species, chironomids are often excluded from regular surveys. In the present study, we sampled 66 Tatra ponds over a 1100-m altitude gradient for benthic invertebrates, with special attention to chironomids. Out of the total 122 taxa collected, Chironomidae constituted the richest group with 58 taxa, being present in all the study ponds. The most diverse pond supported 13 chironomid taxa, and mean diversity was 6 taxa/pond. While total invertebrate richness decreased with altitude, chironomid richness showed only a weak negative response to altitude. The proportion of total chironomid diversity made up of Tanypodinae and Chironominae subfamilies decreased with altitude, while the opposite trend was recorded for the proportion of Diamesinae and Orthocladiinae.