data/napari_merfish/config.json

{
    "raw_data_dir": "/Volumes/MERFISH_COLD/XP1678 20220309 ONI merfish/",
    "analysis_dir": "/Volumes/MERFISH_COLD/XP1678 20220309 ONI merfish/Analysis",
    "stage2pix_scaling":0.116999998688698,
    "stage2z_scaling":1,
    "decoded_img":true,
    "ir_upper":9,
    "z_lower":1,
    "z_upper":10,
    "file_pattern": "merFISH_{{ir:02d}}_{fov}_*.tiff",
    "codebook_name":"C1E1_codebook_shahid.csv"
}