





import os

import numpy
import onnx





def 				__lowerCAmelCase(       _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)							-> Optional[int]:




    """simple docstring"""




    _A     =							a.name
    _A     =							b.name

    _A     =							''
    _A     =							''

    _A     =							a == b

    _A     =							name_a
    _A     =							name_b

    return res





def 				__lowerCAmelCase(       _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)							-> Any:




    """simple docstring"""




    for i, input_name in enumerate(node_proto.input				):
        if input_name == name:
            node_proto.input.insert(_SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)
            node_proto.input.pop(i + 1				)

    if node_proto.op_type == "If":
        _graph_replace_input_with(node_proto.attribute[0].g							,     _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)
        _graph_replace_input_with(node_proto.attribute[1].g							,     _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)
    if node_proto.op_type == "Loop":
        _graph_replace_input_with(node_proto.attribute[0].g							,     _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)





def 				__lowerCAmelCase(       _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)							-> Dict:




    """simple docstring"""




    for n in graph_proto.node:
        _node_replace_input_with(_SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)





def 				__lowerCAmelCase(       _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)							-> List[str]:




    """simple docstring"""




    _A     =							list(model.graph.initializer				)
    _A     =							list(model_without_ext.graph.initializer				)
    for i, ref_i in ind_to_replace:
        assert inits_with_data[i].name == inits[i].name
        assert inits_with_data[ref_i].name == inits[ref_i].name
        assert i > ref_i

        _A     =							inits[i].name
        _A     =							inits[ref_i].name

        model_without_ext.graph.initializer.remove(inits[i]				)

        # for n in model.graph.node:
        _graph_replace_input_with(model_without_ext.graph							,     _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)





def 				__lowerCAmelCase(       _SCREAMING_SNAKE_CASE				)							-> str:




    """simple docstring"""




    _A     =							os.path.dirname(_SCREAMING_SNAKE_CASE				)
    _A     =							os.path.basename(_SCREAMING_SNAKE_CASE				)

    _A     =							onnx.load(os.path.join(_SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)				)

    _A     =							list(model.graph.initializer				)

    _A     =							set()
    _A     =							{}
    _A     =							[]

    _A     =							0

    for i in range(len(_SCREAMING_SNAKE_CASE				)				):
        if i in dup_set:
            continue

        for j in range(i + 1							,     len(_SCREAMING_SNAKE_CASE				)				):
            if j in dup_set:
                continue
            if _is_equal_tensor_proto(inits[i]							,     inits[j]				):
                dup_set.add(_SCREAMING_SNAKE_CASE				)
                dup_set.add(_SCREAMING_SNAKE_CASE				)

                _A     =							inits[j].data_type
                _A     =							numpy.prod(inits[j].dims				)
                if dtype == 1:
                    mem_size *= 4
                elif dtype == 6:
                    mem_size *= 4
                elif dtype == 7 or dtype == 11:
                    mem_size *= 8
                else:
                    print('unexpected data type: '							,     _SCREAMING_SNAKE_CASE				)
                total_reduced_size += mem_size

                _A     =							inits[i].name
                _A     =							inits[j].name

                if name_i in dup_map:
                    dup_map[name_i].append(_SCREAMING_SNAKE_CASE				)
                else:
                    _A     =							[name_j]
                ind_to_replace.append((j, i)				)

    print('total reduced size: '							,     total_reduced_size / 1_024 / 1_024 / 1_024							,     'GB'				)

    _A     =							sorted(_SCREAMING_SNAKE_CASE				)
    _remove_dup_initializers_from_model(_SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)

    _A     =							'optimized_' + model_file_name
    _A     =							os.path.join(_SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)
    onnx.save(_SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)

    return new_model












from __future__ import annotations

import unittest

from transformers import EsmConfig, is_tf_available
from transformers.testing_utils import require_tf, slow

from ...test_configuration_common import ConfigTester
from ...test_modeling_tf_common import TFModelTesterMixin, floats_tensor, ids_tensor, random_attention_mask
from ...test_pipeline_mixin import PipelineTesterMixin


if is_tf_available():
 import numpy
 import tensorflow as tf

 from transformers.models.esm.modeling_tf_esm import (
     TF_ESM_PRETRAINED_MODEL_ARCHIVE_LIST,
     TFEsmForMaskedLM,
     TFEsmForSequenceClassification,
     TFEsmForTokenClassification,
     TFEsmModel,
 )







class      lowerCamelCase:
     '''simple docstring'''


     def __init__(    self				,     snake_case_				,     ):
         _A     =							parent
         _A     =							13
         _A     =							7
         _A     =							True
         _A     =							True
         _A     =							True
         _A     =							99
         _A     =							32
         _A     =							2
         _A     =							4
         _A     =							37
         _A     =							'gelu'
         _A     =							0.1
         _A     =							0.1
         _A     =							512
         _A     =							16
         _A     =							2
         _A     =							0.02
         _A     =							3
         _A     =							4
         _A     =							None




     def        lowerCAmelCase__		(    self							):
         _A     =							ids_tensor([self.batch_size, self.seq_length]				,     self.vocab_size							)

         _A     =							None
         if self.use_input_mask:
             _A     =							random_attention_mask([self.batch_size, self.seq_length]							)

         _A     =							None
         _A     =							None
         _A     =							None
         if self.use_labels:
             _A     =							ids_tensor([self.batch_size]				,     self.type_sequence_label_size							)
             _A     =							ids_tensor([self.batch_size, self.seq_length]				,     self.num_labels							)
             _A     =							ids_tensor([self.batch_size]				,     self.num_choices							)

         _A     =							EsmConfig(
             vocab_size=self.vocab_size				,     hidden_size=self.hidden_size				,     num_hidden_layers=self.num_hidden_layers				,     pad_token_id=1				,     num_attention_heads=self.num_attention_heads				,     intermediate_size=self.intermediate_size				,     hidden_act=self.hidden_act				,     hidden_dropout_prob=self.hidden_dropout_prob				,     attention_probs_dropout_prob=self.attention_probs_dropout_prob				,     max_position_embeddings=self.max_position_embeddings				,     type_vocab_size=self.type_vocab_size				,     initializer_range=self.initializer_range				,     )

         return config, input_ids, input_mask, sequence_labels, token_labels, choice_labels




     def        lowerCAmelCase__		(    self							):
         (
             (
             _A
         ),			(
             _A
         ),			(
             _A
         ),			(
             _A
         ),			(
             _A
         ),			(
             _A
         ),			
         )     =							self.prepare_config_and_inputs()

         _A     =							True
         _A     =							floats_tensor([self.batch_size, self.seq_length, self.hidden_size]							)
         _A     =							ids_tensor([self.batch_size, self.seq_length]				,     vocab_size=2							)

         return (
             config,
             input_ids,
             input_mask,
             sequence_labels,
             token_labels,
             choice_labels,
             encoder_hidden_states,
             encoder_attention_mask,
         )




     def        lowerCAmelCase__		(    self				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_							):
         _A     =							TFEsmModel(config=snake_case_							)
         _A     =							{'input_ids': input_ids, 'attention_mask': input_mask}
         _A     =							model(snake_case_							)

         _A     =							[input_ids, input_mask]
         _A     =							model(snake_case_							)

         _A     =							model(snake_case_							)

         self.parent.assertEqual(result.last_hidden_state.shape				,     (self.batch_size, self.seq_length, self.hidden_size)							)




     def        lowerCAmelCase__		(    self				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     ):
         _A     =							True

         _A     =							TFEsmModel(config=snake_case_							)
         _A     =							{
             'input_ids': input_ids,
             'attention_mask': input_mask,
             'encoder_hidden_states': encoder_hidden_states,
             'encoder_attention_mask': encoder_attention_mask,
         }
         _A     =							model(snake_case_							)

         _A     =							[input_ids, input_mask]
         _A     =							model(snake_case_				,     encoder_hidden_states=snake_case_							)

         # Also check the case where encoder outputs are not passed
         _A     =							model(snake_case_				,     attention_mask=snake_case_							)

         self.parent.assertEqual(result.last_hidden_state.shape				,     (self.batch_size, self.seq_length, self.hidden_size)							)




     def        lowerCAmelCase__		(    self				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_							):
         _A     =							TFEsmForMaskedLM(config=snake_case_							)
         _A     =							model([input_ids, input_mask]							)
         self.parent.assertEqual(result.logits.shape				,     (self.batch_size, self.seq_length, self.vocab_size)							)




     def        lowerCAmelCase__		(    self				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_							):
         _A     =							self.num_labels
         _A     =							TFEsmForTokenClassification(config=snake_case_							)
         _A     =							{'input_ids': input_ids, 'attention_mask': input_mask}
         _A     =							model(snake_case_							)
         self.parent.assertEqual(result.logits.shape				,     (self.batch_size, self.seq_length, self.num_labels)							)




     def        lowerCAmelCase__		(    self							):
         _A     =							self.prepare_config_and_inputs()
         (
             (
             _A
         ),			(
             _A
         ),			(
             _A
         ),			(
             _A
         ),			(
             _A
         ),			(
             _A
         ),			
         )     =							config_and_inputs
         _A     =							{'input_ids': input_ids, 'attention_mask': input_mask}
         return config, inputs_dict







@require_tf
class      lowerCamelCase(						__snake_case			, __snake_case			, unittest.TestCase	):
     '''simple docstring'''


     __magic_name__   =			(
         (
             TFEsmModel,
             TFEsmForMaskedLM,
             TFEsmForSequenceClassification,
             TFEsmForTokenClassification,
         )
         if is_tf_available()
         else ()
     )
     __magic_name__   =			(
         {
             'feature-extraction': TFEsmModel,
             'fill-mask': TFEsmForMaskedLM,
             'text-classification': TFEsmForSequenceClassification,
             'token-classification': TFEsmForTokenClassification,
             'zero-shot': TFEsmForSequenceClassification,
         }
         if is_tf_available()
         else {}
     )
     __magic_name__   =			False
     __magic_name__   =			False




     def        lowerCAmelCase__		(    self							):
         _A     =							TFEsmModelTester(self							)
         _A     =							ConfigTester(self				,     config_class=snake_case_				,     hidden_size=37							)




     def        lowerCAmelCase__		(    self							):
         self.config_tester.run_common_tests()




     def        lowerCAmelCase__		(    self							):
         _A     =							self.model_tester.prepare_config_and_inputs()
         self.model_tester.create_and_check_model(*snake_case_							)




     def        lowerCAmelCase__		(    self							):
         _A     =							self.model_tester.prepare_config_and_inputs_for_decoder()
         self.model_tester.create_and_check_model_as_decoder(*snake_case_							)




     def        lowerCAmelCase__		(    self							):
         _A     =							self.model_tester.prepare_config_and_inputs()
         self.model_tester.create_and_check_for_masked_lm(*snake_case_							)




     def        lowerCAmelCase__		(    self							):
         _A     =							self.model_tester.prepare_config_and_inputs()
         self.model_tester.create_and_check_for_token_classification(*snake_case_							)




     @slow
     def        lowerCAmelCase__		(    self							):
         for model_name in TF_ESM_PRETRAINED_MODEL_ARCHIVE_LIST[:1]:
             _A     =							TFEsmModel.from_pretrained(snake_case_							)
             self.assertIsNotNone(snake_case_							)




     @unittest.skip('Protein models do not support embedding resizing.'							)
     def        lowerCAmelCase__		(    self							):
         pass




     @unittest.skip('Protein models do not support embedding resizing.'							)
     def        lowerCAmelCase__		(    self							):
         pass




     def        lowerCAmelCase__		(    self							):
         _A,			_A     =							self.model_tester.prepare_config_and_inputs_for_common()

         for model_class in self.all_model_classes:
             _A     =							model_class(snake_case_							)
             assert isinstance(model.get_input_embeddings()				,     tf.keras.layers.Layer							)
             if model_class is TFEsmForMaskedLM:
                 # Output embedding test differs from the main test because they're a matrix, not a layer
                 _A     =							model.get_bias()
                 assert isinstance(snake_case_				,     snake_case_							)
                 for k, v in name.items():
                     assert isinstance(snake_case_				,     tf.Variable							)
             else:
                 _A     =							model.get_output_embeddings()
                 assert x is None
                 _A     =							model.get_bias()
                 assert name is None







@require_tf
class      lowerCamelCase(						unittest.TestCase	):
     '''simple docstring'''


     @slow
     def        lowerCAmelCase__		(    self							):
         _A     =							TFEsmForMaskedLM.from_pretrained('facebook/esm2_t6_8M_UR50D'							)

         _A     =							tf.constant([[0, 1, 2, 3, 4, 5]]							)
         _A     =							model(snake_case_							)[0]
         _A     =							[1, 6, 33]
         self.assertEqual(list(output.numpy().shape							)				,     snake_case_							)
         # compare the actual values for a slice.
         _A     =							tf.constant(
             [
                 [
                     [8.92_1518, -10.58_9814, -6.467_1307],
                     [-6.396_7156, -13.91_1377, -1.121_1915],
                     [-7.78_1247, -13.95_1557, -3.74_0592],
                 ]
             ]							)
         self.assertTrue(numpy.allclose(output[:, :3, :3].numpy()				,     expected_slice.numpy()				,     atol=1E-2							)							)




     @slow
     def        lowerCAmelCase__		(    self							):
         _A     =							TFEsmModel.from_pretrained('facebook/esm2_t6_8M_UR50D'							)

         _A     =							tf.constant([[0, 6, 4, 13, 5, 4, 16, 12, 11, 7, 2]]							)
         _A     =							model(snake_case_							)[0]
         # compare the actual values for a slice.
         _A     =							tf.constant(
             [
                 [
                     [0.1444_3092, 0.5412_5327, 0.324_7739],
                     [0.3034_0484, 0.0052_6676, 0.3107_7722],
                     [0.3227_8043, -0.2498_7096, 0.341_4628],
                 ]
             ]							)
         self.assertTrue(numpy.allclose(output[:, :3, :3].numpy()				,     expected_slice.numpy()				,     atol=1E-4							)							)





