





import re

import jax.numpy as jnp
from flax.traverse_util import flatten_dict, unflatten_dict
from jax.random import PRNGKey

from ..utils import logging


__A							:			int         =			logging.get_logger(__name__)





def 				__lowerCAmelCase(       _SCREAMING_SNAKE_CASE				)							-> Union[str, Any]:




    """simple docstring"""




    _A     =							R'\w+[.]\d+'
    _A     =							re.findall(_SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)
    for pat in pats:
        _A     =							key.replace(_SCREAMING_SNAKE_CASE							,     '_'.join(pat.split('.'				)				)				)
    return key





def 				__lowerCAmelCase(       _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)							-> List[str]:




    """simple docstring"""




    _A     =							pt_tuple_key[:-1] + ('scale',)
    if (
        any('norm' in str_ for str_ in pt_tuple_key				)
        and (pt_tuple_key[-1] == "bias")
        and (pt_tuple_key[:-1] + ("bias",) not in random_flax_state_dict)
        and (pt_tuple_key[:-1] + ("scale",) in random_flax_state_dict)
    ):
        _A     =							pt_tuple_key[:-1] + ('scale',)
        return renamed_pt_tuple_key, pt_tensor
    elif pt_tuple_key[-1] in ["weight", "gamma"] and pt_tuple_key[:-1] + ("scale",) in random_flax_state_dict:
        _A     =							pt_tuple_key[:-1] + ('scale',)
        return renamed_pt_tuple_key, pt_tensor

    # embedding
    if pt_tuple_key[-1] == "weight" and pt_tuple_key[:-1] + ("embedding",) in random_flax_state_dict:
        _A     =							pt_tuple_key[:-1] + ('embedding',)
        return renamed_pt_tuple_key, pt_tensor

    # conv layer
    _A     =							pt_tuple_key[:-1] + ('kernel',)
    if pt_tuple_key[-1] == "weight" and pt_tensor.ndim == 4:
        _A     =							pt_tensor.transpose(2							,     3							,     1							,     0				)
        return renamed_pt_tuple_key, pt_tensor

    # linear layer
    _A     =							pt_tuple_key[:-1] + ('kernel',)
    if pt_tuple_key[-1] == "weight":
        _A     =							pt_tensor.T
        return renamed_pt_tuple_key, pt_tensor

    # old PyTorch layer norm weight
    _A     =							pt_tuple_key[:-1] + ('weight',)
    if pt_tuple_key[-1] == "gamma":
        return renamed_pt_tuple_key, pt_tensor

    # old PyTorch layer norm bias
    _A     =							pt_tuple_key[:-1] + ('bias',)
    if pt_tuple_key[-1] == "beta":
        return renamed_pt_tuple_key, pt_tensor

    return pt_tuple_key, pt_tensor





def 				__lowerCAmelCase(       _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE=42				)							-> Union[str, Any]:




    """simple docstring"""




    _A     =							{k: v.numpy() for k, v in pt_state_dict.items()}

    # Step 2: Since the model is stateless, get random Flax params
    _A     =							flax_model.init_weights(PRNGKey(_SCREAMING_SNAKE_CASE				)				)

    _A     =							flatten_dict(_SCREAMING_SNAKE_CASE				)
    _A     =							{}

    # Need to change some parameters name to match Flax names
    for pt_key, pt_tensor in pt_state_dict.items():
        _A     =							rename_key(_SCREAMING_SNAKE_CASE				)
        _A     =							tuple(renamed_pt_key.split('.'				)				)

        # Correctly rename weight parameters
        _A,			_A     =							rename_key_and_reshape_tensor(_SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE							,     _SCREAMING_SNAKE_CASE				)

        if flax_key in random_flax_state_dict:
            if flax_tensor.shape != random_flax_state_dict[flax_key].shape:
                raise ValueError(
                    F"PyTorch checkpoint seems to be incorrect. Weight {pt_key} was expected to be of shape "
                    F"{random_flax_state_dict[flax_key].shape}, but is {flax_tensor.shape}."				)

        # also add unexpected weight so that warning is thrown
        _A     =							jnp.asarray(_SCREAMING_SNAKE_CASE				)

    return unflatten_dict(_SCREAMING_SNAKE_CASE				)












from __future__ import annotations

import unittest

from transformers import EsmConfig, is_tf_available
from transformers.testing_utils import require_tf, slow

from ...test_configuration_common import ConfigTester
from ...test_modeling_tf_common import TFModelTesterMixin, floats_tensor, ids_tensor, random_attention_mask
from ...test_pipeline_mixin import PipelineTesterMixin


if is_tf_available():
 import numpy
 import tensorflow as tf

 from transformers.models.esm.modeling_tf_esm import (
     TF_ESM_PRETRAINED_MODEL_ARCHIVE_LIST,
     TFEsmForMaskedLM,
     TFEsmForSequenceClassification,
     TFEsmForTokenClassification,
     TFEsmModel,
 )







class      lowerCamelCase:
     '''simple docstring'''


     def __init__(    self				,     snake_case_				,     ):
         _A     =							parent
         _A     =							13
         _A     =							7
         _A     =							True
         _A     =							True
         _A     =							True
         _A     =							99
         _A     =							32
         _A     =							2
         _A     =							4
         _A     =							37
         _A     =							'gelu'
         _A     =							0.1
         _A     =							0.1
         _A     =							512
         _A     =							16
         _A     =							2
         _A     =							0.02
         _A     =							3
         _A     =							4
         _A     =							None




     def        lowerCAmelCase__		(    self							):
         _A     =							ids_tensor([self.batch_size, self.seq_length]				,     self.vocab_size							)

         _A     =							None
         if self.use_input_mask:
             _A     =							random_attention_mask([self.batch_size, self.seq_length]							)

         _A     =							None
         _A     =							None
         _A     =							None
         if self.use_labels:
             _A     =							ids_tensor([self.batch_size]				,     self.type_sequence_label_size							)
             _A     =							ids_tensor([self.batch_size, self.seq_length]				,     self.num_labels							)
             _A     =							ids_tensor([self.batch_size]				,     self.num_choices							)

         _A     =							EsmConfig(
             vocab_size=self.vocab_size				,     hidden_size=self.hidden_size				,     num_hidden_layers=self.num_hidden_layers				,     pad_token_id=1				,     num_attention_heads=self.num_attention_heads				,     intermediate_size=self.intermediate_size				,     hidden_act=self.hidden_act				,     hidden_dropout_prob=self.hidden_dropout_prob				,     attention_probs_dropout_prob=self.attention_probs_dropout_prob				,     max_position_embeddings=self.max_position_embeddings				,     type_vocab_size=self.type_vocab_size				,     initializer_range=self.initializer_range				,     )

         return config, input_ids, input_mask, sequence_labels, token_labels, choice_labels




     def        lowerCAmelCase__		(    self							):
         (
             (
             _A
         ),			(
             _A
         ),			(
             _A
         ),			(
             _A
         ),			(
             _A
         ),			(
             _A
         ),			
         )     =							self.prepare_config_and_inputs()

         _A     =							True
         _A     =							floats_tensor([self.batch_size, self.seq_length, self.hidden_size]							)
         _A     =							ids_tensor([self.batch_size, self.seq_length]				,     vocab_size=2							)

         return (
             config,
             input_ids,
             input_mask,
             sequence_labels,
             token_labels,
             choice_labels,
             encoder_hidden_states,
             encoder_attention_mask,
         )




     def        lowerCAmelCase__		(    self				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_							):
         _A     =							TFEsmModel(config=snake_case_							)
         _A     =							{'input_ids': input_ids, 'attention_mask': input_mask}
         _A     =							model(snake_case_							)

         _A     =							[input_ids, input_mask]
         _A     =							model(snake_case_							)

         _A     =							model(snake_case_							)

         self.parent.assertEqual(result.last_hidden_state.shape				,     (self.batch_size, self.seq_length, self.hidden_size)							)




     def        lowerCAmelCase__		(    self				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     ):
         _A     =							True

         _A     =							TFEsmModel(config=snake_case_							)
         _A     =							{
             'input_ids': input_ids,
             'attention_mask': input_mask,
             'encoder_hidden_states': encoder_hidden_states,
             'encoder_attention_mask': encoder_attention_mask,
         }
         _A     =							model(snake_case_							)

         _A     =							[input_ids, input_mask]
         _A     =							model(snake_case_				,     encoder_hidden_states=snake_case_							)

         # Also check the case where encoder outputs are not passed
         _A     =							model(snake_case_				,     attention_mask=snake_case_							)

         self.parent.assertEqual(result.last_hidden_state.shape				,     (self.batch_size, self.seq_length, self.hidden_size)							)




     def        lowerCAmelCase__		(    self				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_							):
         _A     =							TFEsmForMaskedLM(config=snake_case_							)
         _A     =							model([input_ids, input_mask]							)
         self.parent.assertEqual(result.logits.shape				,     (self.batch_size, self.seq_length, self.vocab_size)							)




     def        lowerCAmelCase__		(    self				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_				,     snake_case_							):
         _A     =							self.num_labels
         _A     =							TFEsmForTokenClassification(config=snake_case_							)
         _A     =							{'input_ids': input_ids, 'attention_mask': input_mask}
         _A     =							model(snake_case_							)
         self.parent.assertEqual(result.logits.shape				,     (self.batch_size, self.seq_length, self.num_labels)							)




     def        lowerCAmelCase__		(    self							):
         _A     =							self.prepare_config_and_inputs()
         (
             (
             _A
         ),			(
             _A
         ),			(
             _A
         ),			(
             _A
         ),			(
             _A
         ),			(
             _A
         ),			
         )     =							config_and_inputs
         _A     =							{'input_ids': input_ids, 'attention_mask': input_mask}
         return config, inputs_dict







@require_tf
class      lowerCamelCase(						__snake_case			, __snake_case			, unittest.TestCase	):
     '''simple docstring'''


     __magic_name__   =			(
         (
             TFEsmModel,
             TFEsmForMaskedLM,
             TFEsmForSequenceClassification,
             TFEsmForTokenClassification,
         )
         if is_tf_available()
         else ()
     )
     __magic_name__   =			(
         {
             'feature-extraction': TFEsmModel,
             'fill-mask': TFEsmForMaskedLM,
             'text-classification': TFEsmForSequenceClassification,
             'token-classification': TFEsmForTokenClassification,
             'zero-shot': TFEsmForSequenceClassification,
         }
         if is_tf_available()
         else {}
     )
     __magic_name__   =			False
     __magic_name__   =			False




     def        lowerCAmelCase__		(    self							):
         _A     =							TFEsmModelTester(self							)
         _A     =							ConfigTester(self				,     config_class=snake_case_				,     hidden_size=37							)




     def        lowerCAmelCase__		(    self							):
         self.config_tester.run_common_tests()




     def        lowerCAmelCase__		(    self							):
         _A     =							self.model_tester.prepare_config_and_inputs()
         self.model_tester.create_and_check_model(*snake_case_							)




     def        lowerCAmelCase__		(    self							):
         _A     =							self.model_tester.prepare_config_and_inputs_for_decoder()
         self.model_tester.create_and_check_model_as_decoder(*snake_case_							)




     def        lowerCAmelCase__		(    self							):
         _A     =							self.model_tester.prepare_config_and_inputs()
         self.model_tester.create_and_check_for_masked_lm(*snake_case_							)




     def        lowerCAmelCase__		(    self							):
         _A     =							self.model_tester.prepare_config_and_inputs()
         self.model_tester.create_and_check_for_token_classification(*snake_case_							)




     @slow
     def        lowerCAmelCase__		(    self							):
         for model_name in TF_ESM_PRETRAINED_MODEL_ARCHIVE_LIST[:1]:
             _A     =							TFEsmModel.from_pretrained(snake_case_							)
             self.assertIsNotNone(snake_case_							)




     @unittest.skip('Protein models do not support embedding resizing.'							)
     def        lowerCAmelCase__		(    self							):
         pass




     @unittest.skip('Protein models do not support embedding resizing.'							)
     def        lowerCAmelCase__		(    self							):
         pass




     def        lowerCAmelCase__		(    self							):
         _A,			_A     =							self.model_tester.prepare_config_and_inputs_for_common()

         for model_class in self.all_model_classes:
             _A     =							model_class(snake_case_							)
             assert isinstance(model.get_input_embeddings()				,     tf.keras.layers.Layer							)
             if model_class is TFEsmForMaskedLM:
                 # Output embedding test differs from the main test because they're a matrix, not a layer
                 _A     =							model.get_bias()
                 assert isinstance(snake_case_				,     snake_case_							)
                 for k, v in name.items():
                     assert isinstance(snake_case_				,     tf.Variable							)
             else:
                 _A     =							model.get_output_embeddings()
                 assert x is None
                 _A     =							model.get_bias()
                 assert name is None







@require_tf
class      lowerCamelCase(						unittest.TestCase	):
     '''simple docstring'''


     @slow
     def        lowerCAmelCase__		(    self							):
         _A     =							TFEsmForMaskedLM.from_pretrained('facebook/esm2_t6_8M_UR50D'							)

         _A     =							tf.constant([[0, 1, 2, 3, 4, 5]]							)
         _A     =							model(snake_case_							)[0]
         _A     =							[1, 6, 33]
         self.assertEqual(list(output.numpy().shape							)				,     snake_case_							)
         # compare the actual values for a slice.
         _A     =							tf.constant(
             [
                 [
                     [8.92_1518, -10.58_9814, -6.467_1307],
                     [-6.396_7156, -13.91_1377, -1.121_1915],
                     [-7.78_1247, -13.95_1557, -3.74_0592],
                 ]
             ]							)
         self.assertTrue(numpy.allclose(output[:, :3, :3].numpy()				,     expected_slice.numpy()				,     atol=1E-2							)							)




     @slow
     def        lowerCAmelCase__		(    self							):
         _A     =							TFEsmModel.from_pretrained('facebook/esm2_t6_8M_UR50D'							)

         _A     =							tf.constant([[0, 6, 4, 13, 5, 4, 16, 12, 11, 7, 2]]							)
         _A     =							model(snake_case_							)[0]
         # compare the actual values for a slice.
         _A     =							tf.constant(
             [
                 [
                     [0.1444_3092, 0.5412_5327, 0.324_7739],
                     [0.3034_0484, 0.0052_6676, 0.3107_7722],
                     [0.3227_8043, -0.2498_7096, 0.341_4628],
                 ]
             ]							)
         self.assertTrue(numpy.allclose(output[:, :3, :3].numpy()				,     expected_slice.numpy()				,     atol=1E-4							)							)





