scripts/release/rethreshold_family.py
def checkout_and_search_family(rfam_acc, dest_dir, rfmake=False):
    """
    This function combines family checkout (rfco.pl) and re-scoring of hits
    using rfsearch.pl. If the family directory already exists, then the
    checkout step will be ignored

    rfam_acc: A valid Rfam family accession (RFXXXXX)
    dest_dir: A valid destination directory, where to checkout the family
    rfmake: If True, run rfmake after rfsearch completes. Default False

    return: void
    """

    # get family directory
    family_dir = os.path.join(dest_dir, rfam_acc)
    # checkout family if not done already
    if not os.path.exists(family_dir):
        os.chdir(dest_dir)
        checkout_family(rfam_acc)

    submit_new_rfsearch_job(family_dir, rfmake)

    This function combines family checkout (rfco.pl) and re-scoring of hits
    using rfsearch.pl. If the family directory already exists, then the
    checkout step will be ignored

    rfam_acc: A valid Rfam family accession (RFXXXXX)
    dest_dir: A valid destination directory, where to checkout the family
    rfmake: If True, run rfmake after rfsearch completes. Default False

    return: void
    
This function combines family checkout (rfco.pl) and re-scoring of hits
using rfsearch.pl. If the family directory already exists, then the
checkout step will be ignored

A valid Rfam family accession (RFXXXXX)
dest_dir: A valid destination directory, where to checkout the family
rfmake: If True, run rfmake after rfsearch completes. Default False

void
This function combines family checkout ( rfco . pl ) and re - scoring of hits using rfsearch . pl . If the family directory already exists then the checkout step will be ignored A valid Rfam family accession ( RFXXXXX ) dest_dir : A valid destination directory where to checkout the family rfmake : If True run rfmake after rfsearch completes . Default False void
def checkout_and_search_family(rfam_acc, dest_dir, rfmake=False):
    family_dir = os.path.join(dest_dir, rfam_acc)
    if not os.path.exists(family_dir):
        os.chdir(dest_dir)
        checkout_family(rfam_acc)
    submit_new_rfsearch_job(family_dir, rfmake)
def checkout_and_search_family ( rfam_acc , dest_dir , rfmake = False ) : family_dir = os . path . join ( dest_dir , rfam_acc ) if not os . path . exists ( family_dir ) : os . chdir ( dest_dir ) checkout_family ( rfam_acc ) submit_new_rfsearch_job ( family_dir , rfmake )
This function combines family checkout (rfco.pl) and re-scoring of hits
using rfsearch.pl.
This function combines family checkout ( rfco . pl ) and re - scoring of hits using rfsearch . pl .
"""
    This function combines family checkout (rfco.pl) and re-scoring of hits
    using rfsearch.pl. If the family directory already exists, then the
    checkout step will be ignored

    rfam_acc: A valid Rfam family accession (RFXXXXX)
    dest_dir: A valid destination directory, where to checkout the family
    rfmake: If True, run rfmake after rfsearch completes. Default False

    return: void
    """ # get family directory # checkout family if not done already
rfam_acc
dest_dir
rfmake