JoshuaTree2.py
def softlink_cactus(cactus_distribution_dir,softlink_cactus_name, softlink_hal2maf_name):
    """Softlink cactus distribution's cactus bash script, virtual environment, and hal2maf program. Useful if installed Cactus to particular directory and want to save time in referencing that directory when running cactus."""
    #subprocess.call('ln -s %s %s'%(os.path.abspath(cactus_distribution_dir+'/bin/runProgressiveCactus.sh'),softlink_cactus_name),shell=True)
    #subprocess.call('ln -s %s %s'%(os.path.abspath(cactus_distribution_dir+'/environment'),softlink_env_name),shell=True)
    subprocess.call('ln -s %s %s'%(os.path.abspath(cactus_distribution_dir),softlink_cactus_name),shell=True)
    subprocess.call('ln -s %s %s'%(os.path.abspath(cactus_distribution_dir+'/submodules/hal/bin/hal2mafMP.py'),softlink_hal2maf_name),shell=True)
Softlink cactus distribution's cactus bash script, virtual environment, and hal2maf program. Useful if installed Cactus to particular directory and want to save time in referencing that directory when running cactus.
Softlink cactus distribution's cactus bash script, virtual environment, and hal2maf program. Useful if installed Cactus to particular directory and want to save time in referencing that directory when running cactus.
Softlink cactus distribution ' s cactus bash script virtual environment and hal2maf program . Useful if installed Cactus to particular directory and want to save time in referencing that directory when running cactus .
def softlink_cactus(cactus_distribution_dir,softlink_cactus_name, softlink_hal2maf_name):
    subprocess.call('ln -s %s %s'%(os.path.abspath(cactus_distribution_dir),softlink_cactus_name),shell=True)
    subprocess.call('ln -s %s %s'%(os.path.abspath(cactus_distribution_dir+'/submodules/hal/bin/hal2mafMP.py'),softlink_hal2maf_name),shell=True)
def softlink_cactus ( cactus_distribution_dir , softlink_cactus_name , softlink_hal2maf_name ) : subprocess . call ( 'ln -s %s %s' % ( os . path . abspath ( cactus_distribution_dir ) , softlink_cactus_name ) , shell = True ) subprocess . call ( 'ln -s %s %s' % ( os . path . abspath ( cactus_distribution_dir + '/submodules/hal/bin/hal2mafMP.py' ) , softlink_hal2maf_name ) , shell = True )
Softlink cactus distribution's cactus bash script, virtual environment, and hal2maf program.
Softlink cactus distribution ' s cactus bash script virtual environment and hal2maf program .
"""Softlink cactus distribution's cactus bash script, virtual environment, and hal2maf program. Useful if installed Cactus to particular directory and want to save time in referencing that directory when running cactus.""" #subprocess.call('ln -s %s %s'%(os.path.abspath(cactus_distribution_dir+'/bin/runProgressiveCactus.sh'),softlink_cactus_name),shell=True) #subprocess.call('ln -s %s %s'%(os.path.abspath(cactus_distribution_dir+'/environment'),softlink_env_name),shell=True)
cactus_distribution_dir
softlink_cactus_name
softlink_hal2maf_name