Ghost/make_figs.py
def find_excludes(self,options=None,exp_ghosts=None):
        """find residues to exclude based on an analysis of the structure"""
        excludes={':0007:GLU':[':0004:',':0005',':0006:'],
        ':0015:HIS':[':0011',':0012',':0013',':0014',':0016',':0088',':0090',':0089',':0092'],
        ':0018:ASP':[':0019',':0025',':0026',':0027',':0017',':0021',':0022',':0023',':0024'],
        ':0035:GLU':[':0110',':0036'],':0052:ASP':[':0053',':0045'],
        ':0052:ASP':[':0059','0058',':0045',':0044',':0047',':0053',':0051'],
        ':0101:ASP':[':0102',':0098'],
        ':0119:ASP':[':0121'],
        ':0129:CTERM':[':0128']}
        return excludes
find residues to exclude based on an analysis of the structure
find residues to exclude based on an analysis of the structure
find residues to exclude based on an analysis of the structure
def find_excludes(self,options=None,exp_ghosts=None):
        excludes={':0007:GLU':[':0004:',':0005',':0006:'],
        ':0015:HIS':[':0011',':0012',':0013',':0014',':0016',':0088',':0090',':0089',':0092'],
        ':0018:ASP':[':0019',':0025',':0026',':0027',':0017',':0021',':0022',':0023',':0024'],
        ':0035:GLU':[':0110',':0036'],':0052:ASP':[':0053',':0045'],
        ':0052:ASP':[':0059','0058',':0045',':0044',':0047',':0053',':0051'],
        ':0101:ASP':[':0102',':0098'],
        ':0119:ASP':[':0121'],
        ':0129:CTERM':[':0128']}
        return excludes
def find_excludes ( self , options = None , exp_ghosts = None ) : excludes = { ':0007:GLU' : [ ':0004:' , ':0005' , ':0006:' ] , ':0015:HIS' : [ ':0011' , ':0012' , ':0013' , ':0014' , ':0016' , ':0088' , ':0090' , ':0089' , ':0092' ] , ':0018:ASP' : [ ':0019' , ':0025' , ':0026' , ':0027' , ':0017' , ':0021' , ':0022' , ':0023' , ':0024' ] , ':0035:GLU' : [ ':0110' , ':0036' ] , ':0052:ASP' : [ ':0053' , ':0045' ] , ':0052:ASP' : [ ':0059' , '0058' , ':0045' , ':0044' , ':0047' , ':0053' , ':0051' ] , ':0101:ASP' : [ ':0102' , ':0098' ] , ':0119:ASP' : [ ':0121' ] , ':0129:CTERM' : [ ':0128' ] } return excludes
find residues to exclude based on an analysis of the structure
find residues to exclude based on an analysis of the structure
"""find residues to exclude based on an analysis of the structure"""
self
options
exp_ghosts