humann/store.py
def add_annotated(self, query, matches, annotated_reference, read_length=None):
        """
        Add an alignment with an annotated reference
        """
        
        # Obtain the reference id length and bug
        [referenceid,length,bug]=self.process_reference_annotation(annotated_reference)
        
        self.add(referenceid, length, query, matches, bug, read_length)

        Add an alignment with an annotated reference
        
Add an alignment with an annotated reference
Add an alignment with an annotated reference
def add_annotated(self, query, matches, annotated_reference, read_length=None):
        [referenceid,length,bug]=self.process_reference_annotation(annotated_reference)
        self.add(referenceid, length, query, matches, bug, read_length)
def add_annotated ( self , query , matches , annotated_reference , read_length = None ) : [ referenceid , length , bug ] = self . process_reference_annotation ( annotated_reference ) self . add ( referenceid , length , query , matches , bug , read_length )
Add an alignment with an annotated reference
Add an alignment with an annotated reference
"""
        Add an alignment with an annotated reference
        """ # Obtain the reference id length and bug
self
query
matches
annotated_reference
read_length