scripts/preprocessing/zwd_import_precompute.py
def parse_arguments():
    """
    Basic argument parsing using python's argparse library
    """

    parser = argparse.ArgumentParser(description="Checks for novel ZWD accessions")

    parser.add_argument("--zwd-headers",
                        help="A header file generated directly from ZWD fasta", action="store")
    parser.add_argument("--rfam-urs-list",
                        help="A file listing all ZWD URS accessions in Rfam", action="store")
    # parser.add_argument("--dest-dir",
    # help="Destination directory where output will be stored", action="store")

    parser.add_argument("--type", help="Type of output [URS | TAXIDS]", action="store")

    return parser

    Basic argument parsing using python's argparse library
    
Basic argument parsing using python's argparse library
Basic argument parsing using python ' s argparse library
def parse_arguments():
    parser = argparse.ArgumentParser(description="Checks for novel ZWD accessions")
    parser.add_argument("--zwd-headers",
                        help="A header file generated directly from ZWD fasta", action="store")
    parser.add_argument("--rfam-urs-list",
                        help="A file listing all ZWD URS accessions in Rfam", action="store")
    parser.add_argument("--type", help="Type of output [URS | TAXIDS]", action="store")
    return parser
def parse_arguments ( ) : parser = argparse . ArgumentParser ( description = "Checks for novel ZWD accessions" ) parser . add_argument ( "--zwd-headers" , help = "A header file generated directly from ZWD fasta" , action = "store" ) parser . add_argument ( "--rfam-urs-list" , help = "A file listing all ZWD URS accessions in Rfam" , action = "store" ) parser . add_argument ( "--type" , help = "Type of output [URS | TAXIDS]" , action = "store" ) return parser
Basic argument parsing using python's argparse library
Basic argument parsing using python ' s argparse library
"""
    Basic argument parsing using python's argparse library
    """ # parser.add_argument("--dest-dir", # help="Destination directory where output will be stored", action="store")