frag_pele/Growing/AddingFragHelpers/pdb_joiner.py
def transform_coords(atoms_with_coords):
    """
    Transform the coords of a molecule (ProDy selection) into the coords from a list of atoms of Bio.PDB.
    :param atoms_with_coords: list of atoms (from a Bio.PDB) with the coordinates that we want to set.
    :return: perform the transformation of the coords.
    """
    coords = []
    for atom in atoms_with_coords:
        coords.append(list(atom.get_coord()))
    return np.asarray(coords)

    Transform the coords of a molecule (ProDy selection) into the coords from a list of atoms of Bio.PDB.
    :param atoms_with_coords: list of atoms (from a Bio.PDB) with the coordinates that we want to set.
    :return: perform the transformation of the coords.
    
Transform the coords of a molecule (ProDy selection) into the coords from a list of atoms of Bio.PDB.
Transform the coords of a molecule ( ProDy selection ) into the coords from a list of atoms of Bio . PDB .
def transform_coords(atoms_with_coords):
    coords = []
    for atom in atoms_with_coords:
        coords.append(list(atom.get_coord()))
    return np.asarray(coords)
def transform_coords ( atoms_with_coords ) : coords = [ ] for atom in atoms_with_coords : coords . append ( list ( atom . get_coord ( ) ) ) return np . asarray ( coords )
Transform the coords of a molecule (ProDy selection) into the coords from a list of atoms of Bio.PDB.
Transform the coords of a molecule ( ProDy selection ) into the coords from a list of atoms of Bio . PDB .
"""
    Transform the coords of a molecule (ProDy selection) into the coords from a list of atoms of Bio.PDB.
    :param atoms_with_coords: list of atoms (from a Bio.PDB) with the coordinates that we want to set.
    :return: perform the transformation of the coords.
    """
perform the transformation of the coords.
perform the transformation of the coords .
atoms_with_coords
list of atoms (from a Bio.PDB) with the coordinates that we want to set.
list of atoms ( from a Bio . PDB ) with the coordinates that we want to set .