humann/tests/utils.py
def read_biom_table( path ):
    """
    return the lines in the biom file
    """

    try:
        import biom
    except ImportError:
        raise ImportError("ERROR: Could not find the biom software."+
            " This software is required since the input file is a biom file.")
        
    try:
        tsv_table = biom.load_table( path ).to_tsv().split("\n")
    except (EnvironmentError, TypeError):
        raise EnvironmentError("ERROR: Unable to read biom input file.")
        
    return tsv_table

    return the lines in the biom file
    
return the lines in the biom file
return the lines in the biom file
def read_biom_table( path ):
    try:
        import biom
    except ImportError:
        raise ImportError("ERROR: Could not find the biom software."+
            " This software is required since the input file is a biom file.")
    try:
        tsv_table = biom.load_table( path ).to_tsv().split("\n")
    except (EnvironmentError, TypeError):
        raise EnvironmentError("ERROR: Unable to read biom input file.")
    return tsv_table
def read_biom_table ( path ) : try : import biom except ImportError : raise ImportError ( "ERROR: Could not find the biom software." + " This software is required since the input file is a biom file." ) try : tsv_table = biom . load_table ( path ) . to_tsv ( ) . split ( "\n" ) except ( EnvironmentError , TypeError ) : raise EnvironmentError ( "ERROR: Unable to read biom input file." ) return tsv_table
return the lines in the biom file
return the lines in the biom file
"""
    return the lines in the biom file
    """
path