meeko/tmp/compute_water_map.py
def usage():
        "Print helpful, accurate usage statement to stdout."
        print """\n
                                        /\/\   __ _ _ __  
                                       /    \ / _` | '_ \ 
                                      / /\/\ \ (_| | |_) |           .-.
                                      \/    \/\__,_| .__/           (   )_
                                                   |_|              _/-'(_)
                                   __    __      _                 (_)
                                  / / /\ \ \__ _| |_ ___ _ __ 
                                  \ \/  \/ / _` | __/ _ \ '__|
                                   \  /\  / (_| | ||  __/ |   
                                    \/  \/ \__,_|\__\___|_|   
                                  
        """
        print "\tINPUT\n\t\tEither the receptor filename or the map files.\n"
        print "\t\t\t-r protein.pdbqt    :   the receptor filename is used to guess the OA and HD filenames"
        print "\n\t\t\t\t *OR*\n"
        print "\t\t\t-o protein.OA.map   :   OA map filename (omit if -r is used)"
        print "\t\t\t-h protein.HD.map   :   HD map filename (omit if -r is used)"
        print "\tOUTPUT\n\t\tW map.\n"
        print "\tOPTIONS\n"
        print "\t\t-m (best,avg,coop..):   mix method (default 'best')"
        print "\t\t                        (Other methods are 'avg','coop', 'boost','best_w')"
        print "\t\t-e float            :   entropy penalty value (default: 0.0)"
        print "\t\t-O float            :   oxygen map weight (default: 1.0)"
        print "\t\t-H float            :   hydrogen map weight (default: 1.0)"
        print "\t\t-s protein.W.map    :   W map output filename" 
        print "\t\t   (default: protein.W.map.[mix method].w[eight].o[xygen weight].h[ydrogen weight].E[ntropy correction])"
        print "\n\n"
Print helpful, accurate usage statement to stdout.
Print helpful, accurate usage statement to stdout.
Print helpful accurate usage statement to stdout .
def usage():
        print """\n
                                        /\/\   __ _ _ __  
                                       /    \ / _` | '_ \ 
                                      / /\/\ \ (_| | |_) |           .-.
                                      \/    \/\__,_| .__/           (   )_
                                                   |_|              _/-'(_)
                                   __    __      _                 (_)
                                  / / /\ \ \__ _| |_ ___ _ __ 
                                  \ \/  \/ / _` | __/ _ \ '__|
                                   \  /\  / (_| | ||  __/ |   
                                    \/  \/ \__,_|\__\___|_|   
        """
        print "\tINPUT\n\t\tEither the receptor filename or the map files.\n"
        print "\t\t\t-r protein.pdbqt    :   the receptor filename is used to guess the OA and HD filenames"
        print "\n\t\t\t\t *OR*\n"
        print "\t\t\t-o protein.OA.map   :   OA map filename (omit if -r is used)"
        print "\t\t\t-h protein.HD.map   :   HD map filename (omit if -r is used)"
        print "\tOUTPUT\n\t\tW map.\n"
        print "\tOPTIONS\n"
        print "\t\t-m (best,avg,coop..):   mix method (default 'best')"
        print "\t\t                        (Other methods are 'avg','coop', 'boost','best_w')"
        print "\t\t-e float            :   entropy penalty value (default: 0.0)"
        print "\t\t-O float            :   oxygen map weight (default: 1.0)"
        print "\t\t-H float            :   hydrogen map weight (default: 1.0)"
        print "\t\t-s protein.W.map    :   W map output filename" 
        print "\t\t   (default: protein.W.map.[mix method].w[eight].o[xygen weight].h[ydrogen weight].E[ntropy correction])"
        print "\n\n"
def usage ( ) : print """\n
                                        /\/\   __ _ _ __  
                                       /    \ / _` | '_ \ 
                                      / /\/\ \ (_| | |_) |           .-.
                                      \/    \/\__,_| .__/           (   )_
                                                   |_|              _/-'(_)
                                   __    __      _                 (_)
                                  / / /\ \ \__ _| |_ ___ _ __ 
                                  \ \/  \/ / _` | __/ _ \ '__|
                                   \  /\  / (_| | ||  __/ |   
                                    \/  \/ \__,_|\__\___|_|   
                                  
        """ print "\tINPUT\n\t\tEither the receptor filename or the map files.\n" print "\t\t\t-r protein.pdbqt    :   the receptor filename is used to guess the OA and HD filenames" print "\n\t\t\t\t *OR*\n" print "\t\t\t-o protein.OA.map   :   OA map filename (omit if -r is used)" print "\t\t\t-h protein.HD.map   :   HD map filename (omit if -r is used)" print "\tOUTPUT\n\t\tW map.\n" print "\tOPTIONS\n" print "\t\t-m (best,avg,coop..):   mix method (default 'best')" print "\t\t                        (Other methods are 'avg','coop', 'boost','best_w')" print "\t\t-e float            :   entropy penalty value (default: 0.0)" print "\t\t-O float            :   oxygen map weight (default: 1.0)" print "\t\t-H float            :   hydrogen map weight (default: 1.0)" print "\t\t-s protein.W.map    :   W map output filename" print "\t\t   (default: protein.W.map.[mix method].w[eight].o[xygen weight].h[ydrogen weight].E[ntropy correction])" print "\n\n"
Print helpful, accurate usage statement to stdout.
Print helpful accurate usage statement to stdout .
"Print helpful, accurate usage statement to stdout."