radpipe/stages.py
def multiqc_flagstat(self, input, output, qc_dir, flagstat_dir):
        '''Run MultiQC on the flagstat directory'''
        command = "multiqc --module samtools --outdir {qc_dir} " \
                  "--filename multiqc_flagstat {flagstat_dir}".format(
                      qc_dir=qc_dir, flagstat_dir=flagstat_dir)
        run_stage(self.state, "multiqc", command)
Run MultiQC on the flagstat directory
Run MultiQC on the flagstat directory
Run MultiQC on the flagstat directory
def multiqc_flagstat(self, input, output, qc_dir, flagstat_dir):
        command = "multiqc --module samtools --outdir {qc_dir} " \
                  "--filename multiqc_flagstat {flagstat_dir}".format(
                      qc_dir=qc_dir, flagstat_dir=flagstat_dir)
        run_stage(self.state, "multiqc", command)
def multiqc_flagstat ( self , input , output , qc_dir , flagstat_dir ) : command = "multiqc --module samtools --outdir {qc_dir} " "--filename multiqc_flagstat {flagstat_dir}" . format ( qc_dir = qc_dir , flagstat_dir = flagstat_dir ) run_stage ( self . state , "multiqc" , command )
Run MultiQC on the flagstat directory
Run MultiQC on the flagstat directory
'''Run MultiQC on the flagstat directory'''
self
input
output
qc_dir
flagstat_dir