ragtag_utilities/ContigAlignment.py
def add_alignment(self, in_query_start, in_query_end, in_strand, in_reference_header, in_ref_len, in_ref_start, in_ref_end, in_residue_matches, in_aln_len, in_mapq):
        """ Add an alignment for this query sequence. Return a new instance of the class. """
        return ContigAlignment(
            self.query_header,
            self.query_len,
            self._query_starts + [in_query_start],
            self._query_ends + [in_query_end],
            self._strands + [in_strand],
            self._ref_headers + [in_reference_header],
            self._ref_lens + [in_ref_len],
            self._ref_starts + [in_ref_start],
            self._ref_ends + [in_ref_end],
            self._residue_matches + [in_residue_matches],
            self._aln_lens + [in_aln_len],
            self._mapqs + [in_mapq]
        )
 Add an alignment for this query sequence. Return a new instance of the class. 
Add an alignment for this query sequence. Return a new instance of the class.
Add an alignment for this query sequence . Return a new instance of the class .
def add_alignment(self, in_query_start, in_query_end, in_strand, in_reference_header, in_ref_len, in_ref_start, in_ref_end, in_residue_matches, in_aln_len, in_mapq):
        return ContigAlignment(
            self.query_header,
            self.query_len,
            self._query_starts + [in_query_start],
            self._query_ends + [in_query_end],
            self._strands + [in_strand],
            self._ref_headers + [in_reference_header],
            self._ref_lens + [in_ref_len],
            self._ref_starts + [in_ref_start],
            self._ref_ends + [in_ref_end],
            self._residue_matches + [in_residue_matches],
            self._aln_lens + [in_aln_len],
            self._mapqs + [in_mapq]
        )
def add_alignment ( self , in_query_start , in_query_end , in_strand , in_reference_header , in_ref_len , in_ref_start , in_ref_end , in_residue_matches , in_aln_len , in_mapq ) : return ContigAlignment ( self . query_header , self . query_len , self . _query_starts + [ in_query_start ] , self . _query_ends + [ in_query_end ] , self . _strands + [ in_strand ] , self . _ref_headers + [ in_reference_header ] , self . _ref_lens + [ in_ref_len ] , self . _ref_starts + [ in_ref_start ] , self . _ref_ends + [ in_ref_end ] , self . _residue_matches + [ in_residue_matches ] , self . _aln_lens + [ in_aln_len ] , self . _mapqs + [ in_mapq ] )
Add an alignment for this query sequence.
Add an alignment for this query sequence .
""" Add an alignment for this query sequence. Return a new instance of the class. """
self
in_query_start
in_query_end
in_strand
in_reference_header
in_ref_len
in_ref_start
in_ref_end
in_residue_matches
in_aln_len
in_mapq