ribolands/barmap.py
def add_barmap_args(parser):
    """ A collection of arguments that are used by BarMap """
    ril.argparse_add_arguments(parser,
                               RNAsubopt=True,
                               barriers=True,
                               treekin=True,
                               noLP=True, temperature=True,
                               tmpdir=True, name=True, force=True, verbose=True,
                               start=True, stop=True, k0=True, tX=True, cutoff=True)

    parser.add_argument("--plot_title", default='')

    parser.add_argument("--pyplot", action="store_true",
                        help="Plot the simulation using matplotlib. Interpret the legend \
          using the *log* output")
    parser.add_argument("--xmgrace", action="store_true",
                        help="Print a plot for xmgrace. " +
                        "Interpret the legend using the *log* output")

    parser.add_argument("--adaptive", action="store_true",
                        help="Automatically raise suboptimal energy range if computations fail.")

    parser.add_argument("--s_sortdir", default="/tmp", action="store",
                        help=argparse.SUPPRESS)
    return
 A collection of arguments that are used by BarMap 
A collection of arguments that are used by BarMap
A collection of arguments that are used by BarMap
def add_barmap_args(parser):
    ril.argparse_add_arguments(parser,
                               RNAsubopt=True,
                               barriers=True,
                               treekin=True,
                               noLP=True, temperature=True,
                               tmpdir=True, name=True, force=True, verbose=True,
                               start=True, stop=True, k0=True, tX=True, cutoff=True)
    parser.add_argument("--plot_title", default='')
    parser.add_argument("--pyplot", action="store_true",
                        help="Plot the simulation using matplotlib. Interpret the legend \
          using the *log* output")
    parser.add_argument("--xmgrace", action="store_true",
                        help="Print a plot for xmgrace. " +
                        "Interpret the legend using the *log* output")
    parser.add_argument("--adaptive", action="store_true",
                        help="Automatically raise suboptimal energy range if computations fail.")
    parser.add_argument("--s_sortdir", default="/tmp", action="store",
                        help=argparse.SUPPRESS)
    return
def add_barmap_args ( parser ) : ril . argparse_add_arguments ( parser , RNAsubopt = True , barriers = True , treekin = True , noLP = True , temperature = True , tmpdir = True , name = True , force = True , verbose = True , start = True , stop = True , k0 = True , tX = True , cutoff = True ) parser . add_argument ( "--plot_title" , default = '' ) parser . add_argument ( "--pyplot" , action = "store_true" , help = "Plot the simulation using matplotlib. Interpret the legend \
          using the *log* output" ) parser . add_argument ( "--xmgrace" , action = "store_true" , help = "Print a plot for xmgrace. " + "Interpret the legend using the *log* output" ) parser . add_argument ( "--adaptive" , action = "store_true" , help = "Automatically raise suboptimal energy range if computations fail." ) parser . add_argument ( "--s_sortdir" , default = "/tmp" , action = "store" , help = argparse . SUPPRESS ) return
A collection of arguments that are used by BarMap
A collection of arguments that are used by BarMap
""" A collection of arguments that are used by BarMap """
parser