ragtag_utilities/ContigAlignment.py
def unique_anchor_filter(self, l, keep_small=True):
        """
        Unique anchor filter the alignments. l is the minimum unique alignment length. small_uniques are retained.

        The contents of this method are either influenced by or directly copied from "Assemblytics_uniq_anchor.py"
        written by Maria Nattestad. The original script can be found here:

        https://github.com/MariaNattestad/Assemblytics

        And the publication associated with Maria's work is here:

        Nattestad, Maria, and Michael C. Schatz. "Assemblytics: a
        web analytics tool for the detection of variants from an
        assembly." Bioinformatics 32.19 (2016): 3021-3023.
        """
        lines_by_query = []
        for i, j in zip(self._query_starts, self._query_ends):
            lines_by_query.append((i, j))

        hits = summarize_planesweep(lines_by_query, l, keep_small_uniques=keep_small)
        return self._update_alns(hits)

        Unique anchor filter the alignments. l is the minimum unique alignment length. small_uniques are retained.

        The contents of this method are either influenced by or directly copied from "Assemblytics_uniq_anchor.py"
        written by Maria Nattestad. The original script can be found here:

        https://github.com/MariaNattestad/Assemblytics

        And the publication associated with Maria's work is here:

        Nattestad, Maria, and Michael C. Schatz. "Assemblytics: a
        web analytics tool for the detection of variants from an
        assembly." Bioinformatics 32.19 (2016): 3021-3023.
        
Unique anchor filter the alignments. l is the minimum unique alignment length.



And the publication associated with Maria's work is here.

Nattestad, Maria, and Michael C. Schatz. "Assemblytics: a
web analytics tool for the detection of variants from an
assembly." Bioinformatics 32.19 (2016): 3021-3023.
Unique anchor filter the alignments . l is the minimum unique alignment length . And the publication associated with Maria ' s work is here . Nattestad Maria and Michael C . Schatz . " Assemblytics : a web analytics tool for the detection of variants from an assembly . " Bioinformatics 32 . 19 ( 2016 ) : 3021 - 3023 .
def unique_anchor_filter(self, l, keep_small=True):
        lines_by_query = []
        for i, j in zip(self._query_starts, self._query_ends):
            lines_by_query.append((i, j))
        hits = summarize_planesweep(lines_by_query, l, keep_small_uniques=keep_small)
        return self._update_alns(hits)
def unique_anchor_filter ( self , l , keep_small = True ) : lines_by_query = [ ] for i , j in zip ( self . _query_starts , self . _query_ends ) : lines_by_query . append ( ( i , j ) ) hits = summarize_planesweep ( lines_by_query , l , keep_small_uniques = keep_small ) return self . _update_alns ( hits )
Unique anchor filter the alignments.
Unique anchor filter the alignments .
"""
        Unique anchor filter the alignments. l is the minimum unique alignment length. small_uniques are retained.

        The contents of this method are either influenced by or directly copied from "Assemblytics_uniq_anchor.py"
        written by Maria Nattestad. The original script can be found here:

        https://github.com/MariaNattestad/Assemblytics

        And the publication associated with Maria's work is here:

        Nattestad, Maria, and Michael C. Schatz. "Assemblytics: a
        web analytics tool for the detection of variants from an
        assembly." Bioinformatics 32.19 (2016): 3021-3023.
        """
self
l
keep_small