radpipe/stages.py
def flagstat(self, input, output):
        '''Run Samtools flagstat on final BAM files'''
        safe_make_dir(os.path.dirname(output))
        command = "samtools flagstat {input} > {output}".format(
                          input=input, output=output)
        run_stage(self.state, "flagstat", command)
Run Samtools flagstat on final BAM files
Run Samtools flagstat on final BAM files
Run Samtools flagstat on final BAM files
def flagstat(self, input, output):
        safe_make_dir(os.path.dirname(output))
        command = "samtools flagstat {input} > {output}".format(
                          input=input, output=output)
        run_stage(self.state, "flagstat", command)
def flagstat ( self , input , output ) : safe_make_dir ( os . path . dirname ( output ) ) command = "samtools flagstat {input} > {output}" . format ( input = input , output = output ) run_stage ( self . state , "flagstat" , command )
Run Samtools flagstat on final BAM files
Run Samtools flagstat on final BAM files
'''Run Samtools flagstat on final BAM files'''
self
input
output