jinfo/alignment.py
def identity_filter(self, identity_limit: int = 90, show_id_array: bool = False):
        """
        Filter similar sequences from the alignment

        Remove sequences form the alignment with percantage identity above a certain limit
        Returns: filtered Alignment object
        """

        from jinfo.utils.remove_degenerate_seqs import remove_degenerate_seqs

        return remove_degenerate_seqs(
            alignment_obj=self,
            identity_limit=identity_limit,
            show_id_array=show_id_array,
        )

        Filter similar sequences from the alignment

        Remove sequences form the alignment with percantage identity above a certain limit
        Returns: filtered Alignment object
        
Filter similar sequences from the alignment
Remove sequences form the alignment with percantage identity above a certain limit
Returns: filtered Alignment object
Filter similar sequences from the alignment Remove sequences form the alignment with percantage identity above a certain limit Returns : filtered Alignment object
def identity_filter(self, identity_limit: int = 90, show_id_array: bool = False):
        from jinfo.utils.remove_degenerate_seqs import remove_degenerate_seqs
        return remove_degenerate_seqs(
            alignment_obj=self,
            identity_limit=identity_limit,
            show_id_array=show_id_array,
        )
def identity_filter ( self , identity_limit : int = 90 , show_id_array : bool = False ) : from jinfo . utils . remove_degenerate_seqs import remove_degenerate_seqs return remove_degenerate_seqs ( alignment_obj = self , identity_limit = identity_limit , show_id_array = show_id_array , )
Filter similar sequences from the alignment
Remove sequences form the alignment with percantage identity above a certain limit
Returns: filtered Alignment object
Filter similar sequences from the alignment Remove sequences form the alignment with percantage identity above a certain limit Returns : filtered Alignment object
"""
        Filter similar sequences from the alignment

        Remove sequences form the alignment with percantage identity above a certain limit
        Returns: filtered Alignment object
        """
self
identity_limit
int
show_id_array
bool