List of neuroscience databases
Introduction A number of online neuroscience databases are available which provide information regarding gene expression, neurons, macroscopic brain structure, and neurological or psychiatric disorders. Some databases contain descriptive and numerical data, some to brain function, others offer access to 'raw' imaging data, such as postmortem brain sections or 3D MRI and fMRI images. Some focus on the human brain, others on non-human.As the number of databases that seek to disseminate information about the structure, development and function of the brain has grown, so has the need to collate these resources themselves. As a result, there now exist databases of neuroscience databases, some of which reach over 3000 entries.__TOC__
Neuroscience databases  Name Description Organism Level (gene, neuron, macroscopic) Data (MRI, fMRI, images, descriptive, numerical) Disorder Register to view data? Ref.A Virtual Library for Behavioral Performance in Standard Conditions – Rodent Spontaneous Activity in an Open Field during Repeated Testing and after Treatment with Drugs or Brain LesionsResearch using an animal model of obsessive-compulsive disorder employed a standardized paradigm where the behavior of rats in a large open field was video recorded for 55 min on each test.RatMacroscopicVideoObsessive-compulsive disorderNo Allen Brain Atlas Atlas, stained sections from brains showing development and gene expression Mouse, Human Macroscopic, Gene Images Healthy No  Alzheimer's Disease Neuroimaging Initiative (ADNI) Structural MRI images Human Macroscopic MRI datasets Healthy and Alzheimer's disease Yes  Big Brain 3D reconstruction of complete brain from cell-body stained histology sections at 20 micron isotropic resolution Human Microscopic Images Healthy No  BIRN fMRI and MRI data fMRI, MRI scans and atlases for human and mouse brains  Mouse, Human Multilevel: brain regions, connections, neurons, gene expression patterns MRI datasets, fMRI datasets Healthy, Elderly No Bipolar Disorder Neuroimaging Database Meta-analysis and database of MRI studies Human Macroscopic Descriptive, numerical Bipolar Disorder No  Brain Architecture Management System Online resource for information about neural circuitry Rat, mouse, human Multilevel: brain regions, connections, neurons, gene expression patterns Descriptive, numerical Healthy No  Brain Cloud Gene expression in the human prefrontal cortex Human Gene expression patterns Descriptive, numerical Healthy No   Brain-CODE A multi-modal, cross-disorder platform for integrated neuroscience research and data by the  Ontario Brain Institute. Human, Animal Multimodal datasets (clinical, imaging, molecular, etc.) Descriptive, numerical, imaging, molecular, genetics Neurodevelopmental, Cerebral Palsy, Epilepsy, Depression, Neurodegeneration, Concussion Yes  Brain-Development.org Structural MRI images and Atlases Human Macroscopic MRI datasets Fetuses, healthy and prematurely born neonates Yes Braingraph.org Braingraphs computed from the Human Connectome Project data Human Macroscopic, up to 1015 nodes directed and undirected graphs in anatomically annotated GraphML format Healthy No  Braininfo Atlas, schematic atlas of Macaca fascicularis Macaque Macroscopic Schematic images Healthy Yes Brain Machine Interface Platform Different types of data related to brain machine interface Human, Monkey Macroscopic, Neuron Images, Numerical Healthy No BrainMap.org fMRI coordinate database Human Macroscopic Descriptive Healthy Yes  BrainMaps Atlas, high resolution stained sections from brains Human, primate and non-primate (14 species in all) Neuron and Macroscopic Images Healthy No   Brain/MINDS Dataportal Atlas, in-vivo and ex-vivo MRI scans, ECoG recordings Common Marmoset, Human Macroscopic Images Healthy 	 No  Brede Database  fMRI and PET coordinate database Human Macroscopic Descriptive Healthy No  Brainmuseum.org / MSU Brain Biodiversity Bank Atlas, stained sections from brains and MRI images Human and 62 other species Macroscopic Images Healthy No Brainomics/Localizer fMRI and MRI scans, behavioral data Human Macroscopic Images, Numerical Healthy No  BuzLabDB: The Buzsaki Lab Databank Electrophysiological recordings performed in freely moving rats and mice collected by investigators in the Buzsaki Lab Mice and rats Multiscale Spike trains, LFP, Raw ephys data Healthy No  Caltech Subcortical Atlas  MRI scans  Human Macroscopic MRI Healthy No  Cambridge Centre for Ageing and Neuroscience (Cam-CAN) MRI, fMRI, MEG data for ~700 population-derived healthy adults aged 18–88  Human Macroscopic Images, Descriptive, Numerical Healthy No The Cancer Imaging Archive MRI, CT, and PET imaging of cancer patients with supporting clinical data (in many cases)  Human Macroscopic Images, Descriptive, Numerical Cancer No Cerebellar Development Transcriptome Database Atlas, stained sections from mouse brains showing cerebellar development and gene expression Mouse Macroscopic, Gene Images Healthy No  Collaborative Research in Computational Neuroscience (CRCNS.org) Many kinds of neuroscience results that are relevant for modeling Human and several other species Multiscale Spike trains, LFP, MUA, MRI Healthy Yes DANDI: Distributed Archives for Neurophysiology Data Integrationcellular neurophysiology data including electrophysiology, optophysiology, and behavioral time-series, and images from immunostaining experimentsHuman and several other speciesMultiscaleSpike trains, LFP, MUA, MRIHealthy Database for Reaching Experiments And Models (DREAM) Reaching data (behavioral, generalization, adaptation, learning, spike, fMRI, uncertainty) Human and monkey Macroscopic Kinematic, Spike, fMRI Healthy Yes The fMRI Data Center fMRI datasets from published studies Human Macroscopic fMRI datasets Healthy Yes  GLIMPS Project (GLucose IMaging in Parkinsonian Syndromes)International FDG-PET scan neurodegenerative disease database  HumanMacroscopicFDG-PET imagesParkinson's disease (PD), Alzheimer's disease (AD), multiple system atrophy (MSA), progressive supranuclear palsy (PSP), etc.Yes Hippocampome Portal Circuitry, neural types, electrophysiology Adult human Neuron Cell morphology, electrophysiology, region makeup, connectivity Healthy Yes   IBA: Infant Brain Atlas Infant brain atlases from 2 weeks to 2 years of age Human infants Macroscopic, microscopic, brain regions MRI Healthy No  International Epilepsy Electrophysiology Database (IEEG.org) EEG, metadata, imaging, annotations on data Humans and animal models of epilepsy EEG, local fields, micro-ECoG Electrophysiology Non-healthy, several healthy Yes International Neuroimaging Data-sharing Initiative (INDI) Functional connectivity data from many different groups Invertebrates (47 species in all) Macroscopic Functional connectivity Healthy, non-healthy Yes  Invertebrate Brain Platform Photos of dissections of invertebrates nervous systems Invertebrates (47 species in all) Macroscopic Photos Healthy No  In vivo human phantom Ultrahigh resolution MRI data of a single participant including 150 μm ToF angiography, 250 μm T1-weighted MPRAGE, 330 μm QSM, 450 μm T2-weighted TSE, 800 μm DTI, one hour continuous 1.8 mm rs-fMRI and structural data acquired over more than a decade Human Mesoscopic Structural MRI with various contrasts, microstructure MRI and functional MRI Healthy No  JuBrain atlas Probabilistic cytoarchitectonic 3D maps of the human brain Human Mesoscopic Structural Healthy No Kymata Atlas Functional atlas of the human cortex Human Macroscopic Functional Healthy No Major Depressive Disorder Neuroimaging Database Meta-analysis and database of MRI studies Human Macroscopic Descriptive, numerical Major Depressive Disorder No   Marmoset Gene Atlas Gene expression in the common marmoset whole brain Common Marmoset Macroscopic, Gene Images Healthy No  Mouse Brain Library Atlas, stained sections from mouse brains Mouse Macroscopic Images Healthy No  MouseLightComplete, whole-brain reconstructionsMouseNeuronCell morphology, projectome connectivityHealthyNoNeuroDataVolumetric datasets, atlases, and connectomics researchMultipleMultiscaleImages (3D, 4D)VariousNo Neuroelectro.org Electrophysiology of neurons Human, others Neuron Electrophysiological properties and data Healthy No  Neuromorpho.org 3D models of real neurons Human, rat, mouse, monkey, others Neuron Images and 3D data Healthy No   Neuromorphometrics.com Manually labeled MRI Brain Scans Human Macroscopic T1-weighted MRI, labeled volumes Healthy No  NeuronDB Database of Neuron properties and classification Human Neuron Descriptive Healthy No Neuroimaging Tools and Resources Collaboratory (NITRC)Award-winning free collaboratory with over 1000 neuroinformatics software tools, imaging datasets, and community resources including forums and events.Human, mouse, rat, otherMicroscopic, macroscopicDatasetsHealthy and diseasedNo Open Access Series of Imaging Studies (OASIS) Structural MRI images Human Macroscopic MRI datasets Healthy and Alzheimer's disease Yes  Open Connectome Project Database of different circuitry frameworks and neuroimaging datasets, including volumetric datasets, atlases, and connectomics research Human, mouse, bat, zebrafish, insect, other Multilevel: brain regions, connections, neurons, gene expression patterns Images and 3D data Healthy No  OpenNeuro Large and diverse collection of raw data from various research studies distributed under permissive licenses (CC0 and CC BY). All datasets are formatted according to the same format (Brain Imaging Data Structure) and can be accessed via Amazon S3.Human Macroscopic Functional, structural, diffusion MRI, and Magnetoencephalography datasets Healthy and various diseases  No  Open MEG Archive (OMEGA) Magnetoencephalography, structural MRI datasets, and demographics Human Macroscopic MEG, T1 MRI datasets, demographic data Healthy, ADHD, Traumatic brain injury Yes  The PAIN Repository Structural, Diffusion and Functional MRI datasets  Human Human Macroscopic MRI datasets and Metadata Healthy and Pain Conditions Yes  Pig Brain Atlas Pig Brain Atlas is a three-dimensional MRI-based averaged brain and atlas of the neonatal piglet (Sus scrofa). Pig (Sus scrofa) Macroscopic Structural MRI Healthy Yes   Primate Cell Type Database PrimateDatabase.com, a publicly available web-accessible archive of intracellular patch clamp recordings and highly detailed three-dimensional digital reconstructions of neuronal morphology. Non-human primate and human Neuron Electrophysiology, Morphology and 3-d Reconstructions Healthy No   SchizConnect SchizConnect is an open, public search-and-download virtual database for schizophrenia neuroimaging (MRI) images and related data. Human Macroscopic Structural, Diffusion and Functional MRI datasets, cognitive and clinical assessments Schizophrenia (+ siblings), Bipolar Disorder, Controls (+ siblings) Yes Temple EEG DatabaseOver 30,000 clinical EEGs and accompanying neurologist reportsHumanMacroscopicEEGHealthy and various diseasesYes  Ultrahigh resolution T1-weighted whole brain MR dataset T1-weighted MR data acquired using prospective motion correction at an ultrahigh isotropic resolution of 250 µm. Human Mesoscopic Structural MRI dataset including scanner's raw to processed data Healthy No  UNC-Wisconsin Neurodevelopment Rhesus MRI Database Structural and Diffusion Weighted MRI images in Native and Atlas Space Macaque Macroscopic MRI datasets Healthy No  Whole Brain Atlas Atlas, Structural MRI images and PET images Human Macroscopic Images Healthy and various diseases No NeuroVault Unthresholded statistical maps from MRI and PET studies. Human Macroscopic Images Healthy and various diseases No
Databases of neuroscience databases  Name Description Organism Level (gene, neuron, macroscopic) Data (MRI, fMRI, images, descriptive, numerical) Disorder Register to view data? Ref. Neuroscience Information Framework A meta database of neuroscience-relevant data incorporating over 100 databases. Human, mouse, rat, worm Microscopic, macroscopic Datasets Healthy and diseased No
Neuroscience article aggregators Neuroscience feed at RightRelevance.
See also *Neuroinformatics*Budapest Reference Connectome
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