Pelagibacterales
Introduction The '''Pelagibacterales''' are an order in the Alphaproteobacteria composed of free-living marine bacteria that make up roughly one in three cells at the ocean's surface. Overall, members of the ''Pelagibacterales'' are estimated to make up between a quarter and a half of all prokaryotic cells in the ocean.Initially, this taxon was known solely by metagenomic data and was known as the '''SAR11 clade'''. It was first placed in the Rickettsiales, but was later raised to the rank of order, and then placed as sister order to the Rickettsiales in the subclass Rickettsidae. It includes the highly abundant marine species ''Pelagibacter ubique''. Bacteria in this order are unusually small. Due to their small genome size and limited metabolic function, ''Pelagibacterales'' have become a model organism for 'streamlining theory'.''P. ubique'' and related species are oligotrophs (scavengers) and feed on dissolved organic carbon and nitrogen. They are unable to fix carbon or nitrogen, but can perform the TCA cycle with glyoxylate bypass and are able to synthesise all amino acids except glycine, as well as some cofactors. They also have an unusual and unexpected requirement for reduced sulfur.''P. ubique''  and members of the oceanic subgroup I possess gluconeogenesis, but not a typical glycolysis pathway, whereas other subgroups are capable of typical glycolysis.Unlike ''Acaryochloris marina'', ''P. ubique'' is not photosynthetic — specifically, it does not use light to increase the bond energy of an electron pair — but it does possess proteorhodopsin (including retinol biosynthesis) for ATP production from light.SAR11 bacteria are responsible for much of the dissolved methane in the ocean surface. They extract phosphate from methylphosphonic acid.Although the taxon derives its name from the type species ''P. ubique'' (status'' Candidatus'' species), this species has not yet been validly published, and therefore neither the order name nor the species name has official taxonomic standing.
Subgroups Currently, the order is divided into five subgroups:* Subgroup Ia, open ocean, crown group — includes ''P. ubique'' HTCC1062* Subgroup Ib, open ocean, sister clade to Ia* Subgroup II, coastal, basal to Ia + Ib* Subgroup III, brackish, basal to I + II along with its sister clade IV* Subgroup IV, also known as the LD12 clade, freshwater* Subgroup V, which includes alphaproteobacterium HIMB59, basal to the remainderThe above results in a cladogram of the Pelagibacterales as follows:
Phylogenetic placement and endosymbiotic theory A 2011 study by researchers of the University of Hawaiʻi at Mānoa and Oregon State University, indicated that SAR11 could be the ancestor of mitochondria in most eukaryotic cells. However, this result could represent a tree reconstruction artifact due to compositional bias.
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