runs rigid chaining process concode_field_sep Group[] twistedGroups concode_elem_sep boolean printTimeStamps concode_elem_sep boolean debug concode_elem_sep AFPChain afpChain concode_field_sep void setTwistedGroups concode_elem_sep Group[] chainAfp concode_elem_sep AFPChain getAfpChain concode_elem_sep Group[] getTwistedGroups concode_elem_sep void align
Group [ ] function ( FatCatParameters arg0 , AFPChain arg1 , Atom [ ] arg2 , Atom [ ] arg3 ) { arg0 . setMaxTra ( 0 ) ; arg1 . setMaxTra ( 0 ) ; return chainAfp ( arg0 , arg1 , arg2 , arg3 ) ; }