simple debug method to print a matrix object on system.out . concode_field_sep Matrix centroidB concode_elem_sep Matrix rot concode_elem_sep Matrix centroidA concode_elem_sep Matrix tran concode_field_sep double getTMScore concode_elem_sep Matrix getRotation concode_elem_sep double getRMS concode_elem_sep void calculate concode_elem_sep Atom getTranslation
void function ( Matrix arg0 ) { for ( int loc0 = 0 ; loc0 < arg0 . getRowDimension ( ) ; loc0 ++ ) { for ( int loc1 = 0 ; loc1 < arg0 . getColumnDimension ( ) ; loc1 ++ ) { System . out . print ( "srini_string" + arg0 . get ( loc0 , loc1 ) + "srini_string" ) ; } System . out . println ( "srini_string" ) ; } }