build a ploypeptide by putting the two peptides together concode_field_sep IDOnlyProtein[] EMPTY_ARRAY concode_elem_sep Map<String,IDOnlyProtein> gUsedProteins concode_elem_sep String m_Id concode_field_sep String getSequenceId concode_elem_sep boolean equivalent concode_elem_sep boolean isUnambiguous concode_elem_sep boolean isProbablySemiTryptic concode_elem_sep boolean hasUnmodifiedAminoAcid concode_elem_sep String getId concode_elem_sep PeptideValidity getValidity concode_elem_sep int compareTo concode_elem_sep IDOnlyProtein getUsedProtein concode_elem_sep boolean hasAminoAcid concode_elem_sep IProteinPosition[] getProteinPositions concode_elem_sep char[] getBondPeptideChars concode_elem_sep FastaAminoAcid getNTerminal concode_elem_sep boolean isModified concode_elem_sep IProtein[] getUsedProteins concode_elem_sep IPolypeptide getUnModified concode_elem_sep int getMissedCleavages concode_elem_sep FastaAminoAcid getCTerminal concode_elem_sep int getNumberModifications concode_elem_sep void clearUsedProteins concode_elem_sep int getNumberPeptideBonds concode_elem_sep int getSequenceLength concode_elem_sep IPolypeptide[] cleave concode_elem_sep boolean isValid concode_elem_sep double getMass concode_elem_sep double getMatchingMass concode_elem_sep IPolypeptide subsequence concode_elem_sep String getURL concode_elem_sep double getRetentionTime concode_elem_sep String getAnnotation concode_elem_sep void setRetentionTime concode_elem_sep String toString concode_elem_sep int getAminoAcidCount concode_elem_sep int getAminoAcidCount concode_elem_sep boolean isDecoy concode_elem_sep IPolypeptide asDecoy concode_elem_sep String getSequence concode_elem_sep double getExpectationFactor concode_elem_sep boolean isProtein
IPolypeptide function ( final IPolypeptide arg0 ) { return null ; }