casava 1.3 stores phred-scaled qualities , but non-standard because they have 64 added to them rather than the standard 33 . concode_field_sep int PHRED_ADDEND concode_elem_sep int ILLUMINA_TO_PHRED_SUBTRAHEND concode_elem_sep int SOLEXA_ADDEND concode_elem_sep SolexaQualityConverter singleton concode_elem_sep byte[] phredScore concode_field_sep void convertSolexaQualityCharsToPhredBinary concode_elem_sep void convertSolexaQualityCharsToPhredChars concode_elem_sep byte convertSolexaQualityCharToPhredBinary concode_elem_sep SolexaQualityConverter getSingleton concode_elem_sep byte[] getSolexaToPhredConversionTable concode_elem_sep byte solexaCharToPhredBinary
void function ( final byte [ ] arg0 ) { for ( int loc0 = 0 ; loc0 < arg0 . length ; ++ loc0 ) { arg0 [ loc0 ] -= SOLEXA_ADDEND ; } }