filter 1 for afp extration : the distance of end-to-end concode_field_sep boolean debug concode_field_sep void sortAfps concode_elem_sep double getRmsd concode_elem_sep double scoreAfp concode_elem_sep boolean filterTerminal concode_elem_sep void extractAFPChains concode_elem_sep Atom[] getFragment
double function ( Atom [ ] arg0 , Atom [ ] arg1 , int arg2 , int arg3 , int arg4 , int arg5 ) { double loc0 = 99 ; double loc1 = Calc . getDistance ( arg0 [ arg2 ] , arg0 [ arg3 ] ) ; double loc2 = Calc . getDistance ( arg1 [ arg4 ] , arg1 [ arg5 ] ) ; loc0 = loc1 - loc2 ; return Math . abs ( loc0 ) ; }