should we create bonds between atoms when parsing a file ? concode_field_sep int atomCaThreshold concode_elem_sep boolean headerOnly concode_elem_sep boolean updateRemediatedFiles concode_elem_sep boolean parseSecStruc concode_elem_sep boolean alignSeqRes concode_elem_sep boolean loadChemCompInfo concode_elem_sep int MAX_ATOMS concode_elem_sep boolean storeEmptySeqRes concode_elem_sep long serialVersionUID concode_elem_sep boolean createAtomBonds concode_elem_sep int maxAtoms concode_elem_sep int ATOM_CA_THRESHOLD concode_elem_sep String[] fullAtomNames concode_elem_sep boolean parseCAOnly concode_elem_sep boolean parseBioAssembly concode_field_sep void setUpdateRemediatedFiles concode_elem_sep void setParseSecStruc concode_elem_sep void setParseBioAssembly concode_elem_sep boolean isHeaderOnly concode_elem_sep void setCreateAtomBonds concode_elem_sep boolean isParseBioAssembly concode_elem_sep boolean isParseCAOnly concode_elem_sep boolean isAlignSeqRes concode_elem_sep void setAtomCaThreshold concode_elem_sep void setDefault concode_elem_sep void setAcceptedAtomNames concode_elem_sep boolean isParseSecStruc concode_elem_sep int getMaxAtoms concode_elem_sep void setStoreEmptySeqRes concode_elem_sep boolean isUpdateRemediatedFiles concode_elem_sep void setAlignSeqRes concode_elem_sep void setHeaderOnly concode_elem_sep boolean isLoadChemCompInfo concode_elem_sep void setParseCAOnly concode_elem_sep String[] getAcceptedAtomNames concode_elem_sep int getAtomCaThreshold concode_elem_sep boolean getStoreEmptySeqRes concode_elem_sep void setLoadChemCompInfo concode_elem_sep void setMaxAtoms
boolean function ( ) { return createAtomBonds ; }