set maximum number of alignments in the alignmentregion result concode_field_sep AlignmentDataReader<SAMFileHeader> alignmentDataReader concode_elem_sep Alignment prevAlignment concode_elem_sep int chunkSize concode_elem_sep int maxSequenceSize concode_elem_sep int defaultChunkSize concode_elem_sep int defaultMaxSequenceSize concode_field_sep boolean pre concode_elem_sep List<AlignmentRegion> read concode_elem_sep List<AlignmentRegion> read concode_elem_sep boolean post concode_elem_sep void setMaxSequenceSize concode_elem_sep boolean close concode_elem_sep boolean open concode_elem_sep int getChunkSize
void function ( int arg0 ) { this . chunkSize = arg0 ; }