adds a set of atoms , subsequent call to getcontacts will produce the interatomic contacts . the bounding box of the atoms will be computed based on input array concode_field_sep boolean noOverlap concode_elem_sep int SCALE concode_elem_sep BoundingBox ibounds concode_elem_sep GridCell[][][] cells concode_elem_sep Atom[] jAtoms concode_elem_sep int[] bounds concode_elem_sep double cutoff concode_elem_sep int cellSize concode_elem_sep BoundingBox jbounds concode_elem_sep Atom[] iAtoms concode_field_sep int xintgrid2xgridindex concode_elem_sep int yintgrid2ygridindex concode_elem_sep void findFullGridIntBounds concode_elem_sep boolean isNoOverlap concode_elem_sep int zintgrid2zgridindex concode_elem_sep int getFloor concode_elem_sep int[] getIntBounds concode_elem_sep void fillGrid concode_elem_sep double getCutoff concode_elem_sep AtomContactSet getContacts
void function ( Atom [ ] arg0 ) { addAtoms ( arg0 , ( BoundingBox ) null ) ; }