Backbone view that "starts" the application I use the the View below to get things started.  I'm not interested in Marionette.

This code is what is constructed when the application first loads.  It in turn loads the composite view which is common to all loads. It also constructs other objects needed for the application.

I'm looking for feedback on code structure and not naming conventions.

/***********************************************************************************************************************
** BVApp
*/


    var BVApp = Backbone.View.extend({
        Name: 'BVApp',
        el: window,
        initialize: function () {
            var token = Storage.getToken(),
                pub_req = $A.Reg.get('pub_req');

            // View like objects - inject DOM elements needed
            var BodyInstance = new Body(document.body);
            var ErrorHandlerInstance = new ErrorHandler(document.body);
            var TitleAjaxInstance = new TitleAjax($A.el("#timer"));

            this.setFrame();
            this.loadCommonViews();
            if (pub_req) {
                Page.flip('splash');
            } else if (!token) {
                Page.flip('splash');
            } else {
                this.loadViews(token);
            }
        },
        setFrame: function () {
            var test = $A.el('#super-1');
            if(test){
                test.style.display='none';
            }
            $A.el('#mega_wrap').style.display='inherit';
        },
        loadCommonViews: function () {
            $A.Mod.add(new BVFave({el: $A.el('#fm'), collection: new BCFave([], {data: {h_token: "1FOO", model: "FavoriteReader"}})}));
            $A.Mod.add(new BVFeed({el: $A.el('#at_view'), collection: new BCFeed([], {data: {h_token: "1FOO", model: "FeedReader"}})}));
        },
        loadViews: function (token) {
            var composite_view = $A.Mod.add(new BVComposite());
            composite_view.render(token);
            Page.flip(Storage.get('page'));
        }
    });
You should shorten this up


if (pub_req) {
    Page.flip('splash');
} else if (!token) {
    Page.flip('splash');
} else {
    this.loadViews(token);
}



by merging the first two if statements, like this

if (pub_req || !token) {
    Page.flip('splash');
} else {
    this.loadViews(token);
}


This evaluates in exactly the same order as your code did, but it is shorter.




// View like objects - inject DOM elements needed
var BodyInstance = new Body(document.body);
var ErrorHandlerInstance = new ErrorHandler(document.body);
var TitleAjaxInstance = new TitleAjax($A.el("#timer"));



You have declared these variables but then you don't use any of them, anywhere in the code that you have posted, I can only assume that you don't need these and that you should remove the dead code laying around in your code.