How do I use print to generate a PDF of all entities referencing a specific node? I'm trying to use the Print module to generate pdf's and epubs of the stories on my site. However, I need to get Print to generate these files from the story page and then generate the pdf with ALL nodes that reference the story, the chapters. I'm not sure how to do this as I've never really done tpl.php's before. I need some help here. 

Can print be made to work with a panels layout that shows what I want in it? I have a panels layout working mostly for an example of what I'm trying to achieve. 

http://fanbards.net/print/stories/13008

How do I make the tpl.php file I need to make that end up as my print selections for Stories?
Seeing the url for print layout works fine, my first suggestion would be, that you can actually do it simply by activating the pdf module and changing the path to trigger the 'pdf-generator':

print-path:
http://fanbards.net/print/stories/13008

printpdf-path: http://fanbards.net/printpdf/stories/13008

…you may find further useful info about this on the documentation page for Print.