Change CKEditor config.js without modifying module code? I'm using the CKEditor module and I need to adjust config.js in the module's root.  The problem is I don't want to make changes to any files part of the module because all those changes will get blasted when I do a code update.

How can I apply changes to CKEditor's config.js without modifying the module's copy of config.js?
Can you add the setting inside the Custom JavaScript configuration field of the Advanced Options for a particular profile?

There's also the ability to load your own custom config.js file in the 'Load ckeditor.config.js from the theme path' setting under the 'Advanced' section in the CKEditor profile settings.