Running MaxQuant on Linux I'm trying to run MaxQuant on a linux laptop, hower I'm constantly running into problems with MaxQuant crashing at different stages

I tried to use


mono 6.8
mono 5.4.1


on 


centos
ubuntu


each with MaxQuant


1.6.3
1.6.7
1.6.11


(everything using docker), but I had no success so far.

I also tried to use the ahead of time compilation of mono, also without sucess.
MQ mostly stalls at the "preparing searches" stage.

Has anyone managed to get MQ running properly on linux and can tell me, which linux distro/version, mono version and MQ version you are using?

Any other help is of course also welcome
There is a conda package for maxquant that should work on most platforms (I've used it on CentOS and I think it's been used on Ubuntu as well). There's also a docker container version of that that we (Bioconda) have posted to the biocontainers project that should also work.

Please note that large parts of a maxquant analysis are single threaded, regardless of what you specify. We've also had single analysis runs lasting over a month (even when using 90 threads), so the program can be very slow if your search space is large.