How to import a phylogenetic tree (in nexus format) with node support values in R I have a phylogenetic tree in nexus format that was generated with RAxML. In the tree file, there are node support values. I want to plot this tree in R with the support values showing. However, when I import the tree file in R with the read.nexus function in ape, the node values do not appear in $node.labels. Can someone recommend another option in R?
I recommend you this tutorial about ggtree. You will find the solution.
[https://guangchuangyu.github.io/ggtree-book/short-introduction-to-r.html][ggtree]