how to get FlyBase ID conversion table FlyBase uses systematic naming of genes, transcripts and proteins in a format FBtypeNUMBER. However, the numbers are not the same for genes and their products. For example gene FBgn0259101 transcribes to FBtr0299513 and translates to FBpp0288787.

On this webpage users can conver individual IDs, but what If I need to convert practically whole transcriptome? Where can I get the full translation table?
Indeed the web interface does not seem to link the full translation table, but it is available on their ftp server at releases -&gt; release_ID -&gt; precomputed_files -&gt; genes -&gt; fbgn_fbtr_fbpp_fb_2019_06.tsv.gz

For example, this is the latest (FB2019_06) translation table available.