Error downloading GSE dataset I've installed GEOquery with
&gt;install.packages(&quot;BiocManager&quot;)
&gt;BiocManager::install(&quot;GEOquery&quot;)
&gt;library(GEOquery).

then I ran the command
&gt;GSE68808 &lt;- getGEO(&quot;GSE68808&quot;)

but it resulted in..
&gt;Found 1 file(s)
GSE68808_series_matrix.txt.gz
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68808/matrix/GSE68808_series_matrix.txt.gz'
Content type 'application/x-gzip' length 4138819 bytes (3.9 MB)
downloaded 3.9 MB

error: 'C:\Users\(myname)\AppData\Local\Temp\RtmpUp5Sv7\file8e844a7a59bc' does not exist.

ㅜㅜ
How can I solve this? thanks.
There seems to be some problem with your &quot;platform specific tempdir&quot; that is used by getGEO's destdir parameter. See ?getGEO for more info on the destdir parameter.
Try
GSE68808 &lt;- getGEO(&quot;GSE68808&quot;, destdir = getwd())