no result from heat map WGCNA I have created a heat map using WGCNA using R. But the heat map command is not showing the plot and there is no error. I have a large number of modules and traits. I am not sure if that is the reason. But I tried making it in HPC R and it still is not showing any result plot. Thank you!
The plot is probably being drawn to a device that you cannot view on a cluster. If you're using the plotNetworkHeatmap function, say, try something like this:
png(&quot;plot.png&quot;, ...) #specify height, width, etc
plotNetworkHeatmap(....) #call your function
dev.off()

Now, scp the plot.png file over to your local machine to view the plot.