Using data mining of papers in order to derive genomic connections Are there any examples of researchers data mining articles and papers (e.g., from pubmed or google scholar) in order to derive relations between genes and diseases?
There are many databases that have used publication scraping for oncogenic gene fusions. There are publications for the individual methods they used for their scraping and aggregation.


COSMIC - http://cancer.sanger.ac.uk/cosmic
TICdb - http://www.unav.es/genetica/TICdb/
ChimerDB - http://ercsb.ewha.ac.kr/fusiongene/ -
https://www.ncbi.nlm.nih.gov/pubmed/27899563