Display a score or graph to visualize the degree of conservation of each residue from alignment data I would like to display a score or graph to visualize the degree of conservation of each residue from the amino acid alignment data.
If possible, I'd like to extract the parts of the game that scored above a certain level.
Is there a tool or source code (python) to do that?
Sorry for my bad English ...
I would suggest a logo plot, e.g.:

I would take @Devon Ryan's suggestion to create a multiple sequence alignment (MSA), and plug that into that logo plot tool (or others, there are many like it).