Bit Bang signal generation #include &lt;Wire.h&gt;
  #include &lt;LiquidCrystal_I2C.h&gt;
  #include &quot;digitalWriteFast.h&quot;
  
  #define BUTTONPIN 2
  #define FDCSPIN 6
  #define CIPIN 5
  #define SPEAKERPIN 4
  
  float RPM=1000.0;
  int PWus=1.5*1000.0;
  int FDCSoffset=(1000.0/RPM/60.0/4.0) - (PWus/1000.0);
  int totalCnt;
  int CIState=B00000000;
  bool Buttonstate=0;
  LiquidCrystal_I2C lcd(0x27, 20, 4);
   
  void setup() 
  {
    Serial.begin(9600);
    lcd.begin();
    lcd.backlight();
    lcd.clear();
    lcd.print(&quot;READY TO TEST&quot;); // Waiting for button press
    pinMode(BUTTONPIN, INPUT);// Setting button as Input
    pinMode(FDCSPIN, OUTPUT); // Fuel Delivery Control Signal
    pinMode(CIPIN, OUTPUT); // Cylinder Identification
    digitalWriteFast(FDCSPIN, LOW);
    digitalWriteFast(CIPIN, LOW);
  }
  
  void loop() 
  {
   Buttonstate=digitalReadFast(BUTTONPIN);
   if(Buttonstate==1)
   {
    delay(5);
    if(Buttonstate==1)
    {
      runInjectorTest();
    }
   }
  }
  void runInjectorTest()
  {
    lcd.print(&quot;Test Run&quot;);
    playtesttone();
    
      
      for(totalCnt=0;totalCnt&lt;8000;totalCnt++)
      {
      
        PORTD=CIState;
        delayMicroseconds(PWus);
        PORTD=PORTD^B01000000;
        delayMicroseconds(FDCSoffset);
        if(totalCnt%4==0)
        {
          CIState=CIState^B00100000;
        }
      }
    totalCnt=0;
    playfinishtone();
  }
  void playtesttone()
  {
    tone(SPEAKERPIN, 500, 500);
    delay(700);
    tone(SPEAKERPIN, 500, 500);
    delay(700);
    tone(SPEAKERPIN, 500, 500);
    delay(700);
    tone(SPEAKERPIN, 2000, 500);
  }
  void playfinishtone()
  {
  
    tone(SPEAKERPIN, 2000, 500);
    delay(700);
    tone(SPEAKERPIN, 2000, 500);
    delay(700);
    tone(SPEAKERPIN, 2000, 500);
    delay(700);
    tone(SPEAKERPIN, 500, 500);
  
  }

I am trying to generate 2 signals using the code above and this output is 
From the image, the lime green signal is called FDCS and the other is called CI. Note that the scope shows the inverted form of the signal. I want the falling edge of CI to match with the Falling edge of the 5th FDCS signal (right now rising edge is matching with the falling edge of the CI signal). But the Rising edge of the CI signal should match with the Rising edge of the first FDCS signal (which it's already doing). How do I change my code to do this?
If I understand correctly, you signal has a period of 8 FDCS pulses:
4 with CI high and 4 with CI low. Since the rising and falling edges of
CI do not happen at the same place relative to the FDCS pulses, you
should handle these separately.
I suggest something like the following. Note that, as I do not know what
signal(s) your setup inverted, I just try to reproduce what you show on
the scope, with non inversion:
uint8_t portState = 0;
for (int totalCnt = 0; totalCnt &lt; 16000; totalCnt++)
{
    // On pulse 0, CI rises with FDCS.
    portState |= _BV(FDCSPIN);
    if (totalCnt % 8 == 0)
        portState |= _BV(CIPIN);
    PORTD = portState;

    delayMicroseconds(FDCSoffset);  // pulse width

    // On pulse 4, CI falls with FDCS.
    portState &amp;= ~_BV(FDCSPIN);
    if (totalCnt % 8 == 4)
        portState &amp;= ~_BV(CIPIN);
    PORTD = portState;

    delayMicroseconds(PWus);  // inter-pulse delay
}