Question on Honeywell Thermostat
I'm assuming that R, Y, and G come from the air handler. While Rh and W come from the boiler.

That would mean that you need to:


Remove the jumper between R and Rc
Connect Rh from boiler to R on the thermostat
W from boiler to W on thermostat
R from A/C to Rc on thermostat
Y from A/C to Y on thermostat
G from A/C to G on thermostat