Wiring confusion with 3-way switches that control 2 lights
I figured it out, once I had both switches out of the box and pulled out all the bundled wires it was easy enough to figure out where everything was going and what was going on based on what was working, there was a hot circuit coming in, circuits going out to each light, and the 3-way circuit going between the switches, so it was easy enough to identify the lines running to each light and put them in parallel. Cheers.