Cannot open table mysql/innodb_index_stats
PROBLEM
In MySQL 5.6, ibdata1 includes 5 InnoDB in the mysql schema.
mysql&gt; select table_name from information_schema.tables
    -&gt; where table_schema='mysql' and engine='InnoDB';
+----------------------+
| table_name           |
+----------------------+
| innodb_index_stats   |
| innodb_table_stats   |
| slave_master_info    |
| slave_relay_log_info |
| slave_worker_info    |
+----------------------+
5 rows in set (0.00 sec)

mysql&gt;

In MySQL versions before 5.6, if you shutdown mysql, delete ibdata1, and start mysql back up, ibdata1 gets recreated. If you do this with MySQL 5.6, these 5 tables are not recreated. Even if your deleted ibdata1, the following 10 files are still in /var/lib/mysql/mysql:

innodb_index_stats.frm
innodb_index_stats.ibd
innodb_table_stats.frm
innodb_table_stats.ibd
slave_master_info.frm
slave_master_info.ibd
slave_relay_log_info.frm
slave_relay_log_info.ibd
slave_worker_info.frm
slave_worker_info.ibd

I learned this early on. With a newly created or damaged ibdata1, there are no corresponding data dictionary entries for those 5 tables.
In your particular case, I suspect you copied ibdata1 from a Linux server to the Windows server. MySQL/Windows would be expecting the data dictionary to have the DOS Filename Format. Moving that ibdata1 to Windows, MySQL/Windows cannot relate to the Linux filename and path for pointing to the .frm and .ibd files.
SOLUTION
STEP 01 : Install MySQL on another DB Server
STEP 02 : mysqldump only those 5 tables
TABLELIST=&quot;innodb_index_stats&quot;
TABLELIST=&quot;${TABLELIST} innodb_table_stats&quot;
TABLELIST=&quot;${TABLELIST} slave_master_info&quot;
TABLELIST=&quot;${TABLELIST} slave_relay_log_info&quot;
TABLELIST=&quot;${TABLELIST} slave_worker_info&quot;
mysqldump -uroot -p mysql ${TABLELIST} &gt; mysql_innodb_tables.sql

STEP 03 : Copy mysql_innodb_tables.sql to the DB Server with bad tables.
STEP 04 : Execute mysql_innodb_tables.sql
STEP 05 : Run FLUSH TABLES; (Optional)
Give it a Try !!!