Getting results without using IN
Try creating a temporary table to hold all of the IDs you want to search on then join in that temporary table. 

create table tmpIds(id int not null)
insert into tmpIds (59156)
insert into tmpIds (57045)
etc...

SELECT COUNT(*) 
FROM "VERSION"
INNER JOIN tmpIds ON 
"VERSION"."VERSION_ID" = tmpIds.id

drop table tmpIds