Server warnings on MongoDB startup
You need to apply what MongoDB Docs say:

https://docs.mongodb.org/manual/tutorial/transparent-huge-pages/

I installed MongoDB 3.0.8 as couple of months ago and got the same warnings. This setting was set by Amazon. First thing to do is create a script that can enable and disable Transparent Pages. Documentation gives this:

#!/bin/sh
### BEGIN INIT INFO
# Provides:          disable-transparent-hugepages
# Required-Start:    $local_fs
# Required-Stop:
# X-Start-Before:    mongod mongodb-mms-automation-agent
# Default-Start:     2 3 4 5
# Default-Stop:      0 1 6
# Short-Description: Disable Linux transparent huge pages
# Description:       Disable Linux transparent huge pages, to improve
#                    database performance.
### END INIT INFO

case $1 in
  start)
    if [ -d /sys/kernel/mm/transparent_hugepage ]; then
      thp_path=/sys/kernel/mm/transparent_hugepage
    elif [ -d /sys/kernel/mm/redhat_transparent_hugepage ]; then
      thp_path=/sys/kernel/mm/redhat_transparent_hugepage
    else
      return 0
    fi

    echo 'never' &gt; ${thp_path}/enabled
    echo 'never' &gt; ${thp_path}/defrag

    unset thp_path
    ;;
esac


I use CentOS. I had this script made and I chkconfig'd it as a service so THP is disabled at startup.

In your case, you will have to run the script, restart MongoDB (service mongod restart), login to mongo and that warning should be gone. You need to follow the docs for Ubuntu as it says to install using:

sudo update-rc.d disable-transparent-hugepages defaults