Why does MySQL produce so many temporary MYD files?
There are some options that can cause temp tables to materialize as MyISAM tables or can be configured to delay it. Keep in mind that for disk-based temp tables, there are no .frm files, but only .MYD and .MYI files (of course. the .MYI file is never used since it is impossible index an internal temp table).

Here are the options:


Temp Table Variables That Should Be the Same Size

tmp_table_size
max_heap_table_size

sort_buffer_size
join_buffer_size


You should also consider the MySQL Documentation on Internal Temp Table Usage

The situations where in-memory temp tables are made are


If there is an ORDER BY clause and a different GROUP BY clause, or if the ORDER BY or GROUP BY contains columns from tables other than the first table in the join queue, a temporary table is created.
DISTINCT combined with ORDER BY may require a temporary table.
If you use the SQL_SMALL_RESULT option, MySQL uses an in-memory temporary table, unless the query also contains elements (described later) that require on-disk storage.


When an in-memory temp table exceeded the minimum of (tmp_table_size or max_heap_table_size), mysqld does the following:


Suspends the query
Copies the in-memory table's contents into a MyISAM temp table
Discards the in-memory table
Continues the query, sending the temp data into the MyISAM temp table


The situations where in-memory temp tables are bypassed in favor of disk are


Presence of a BLOB or TEXT column in the table
Presence of any column in a GROUP BY or DISTINCT clause larger than 512 bytes
Presence of any column larger than 512 bytes in the SELECT list, if UNION or UNION ALL is used


Some due diligence is required to reduce temp table creation on disk


Setting join_buffer_size bigger
Setting sort_buffer_size bigger
Setting tmp_table_size and max_heap_table_size bigger
Tuning queries to minimize or even prevent temp tables
Creating indexes to create presorted view of data from individual tables
Installing additional RAM to accommodate large in-memory temp tables


If after such due diligence, there are still temp tables being formed on Disk, here is one desperate move: Mapping disk-based temp table creation to memory.

Here is a quick-and-dirty way to set up a 16GB RAM Disk using tmpdir

STEP01) Create RAM Disk Folder    

mkdir /var/mysql_tmpfs


STEP02) Add this to my.cnf

[mysqld]
tmpdir=/var/mysql_tmpfs


STEP03) Add this to /etc/fstab

echo "none /var/mysql_tmpfs tmpfs defaults,size=16g 1 2" &gt;&gt; /etc/fstab


STEP04) Reload /etc/fstab

mount -a


STEP05) service mysql restart

After this, all temp table that become MyISAM are written to the RAM Disk. This should speed disk-based temp table creation.

Give it a Try !!!