What is the most convenient indexing strategy for two foreign key constraints?
The create table script 2 is correct. 

InnoDB requires indexes on foreign keys and referenced keys so that foreign key checks can be fast and not require a table scan. In the referencing table, there must be an index where the foreign key columns are listed as the first columns in the same order. Such an index is created on the referencing table automatically if it does not exist. (This is in contrast to some older versions, in which indexes had to be created explicitly or the creation of foreign key constraints would fail.) index_name, if given, is used as described previously.