SQL Server Profiler - Disable auto scroll by default
Here you go my good man,

Create the following MyProfiler.vbs file in insert the following code: 

Set WshShell = WScript.CreateObject("WScript.Shell")
WshShell.Run "PROFILER.EXE /S &lt;your SQL Server Name&gt; /T Standard"
WshShell.AppActivate "PROFILER.EXE"
WScript.Sleep(5000) 
WshShell.sendkeys "%(WO)", True


Now, run MyProfiler.vbs. 

Note: 

It takes a few seconds to load Profiler.exe so sleep is set to 5 seconds. Otherwise, the auto-scroll commands will be input into the command window where MyProfiler is running. Cheers...

p.s. 

You can run whichever template you prefer. I'm running the SQL Server Standard Template with /T.