Why would an index covering only half of primary key be useful?
The Database Tuning Advisor does not always make sensible suggestions. It is always a good idea to review any suggestions made (by any tool more that matter).

In general, the cost of an index seek is directly related to the depth of the B+Tree that makes up that index. Seeking in an index that is 8 levels deep is 4 times as expensive as seeking in an index that is only 2 levels deep. The depth of the index is strongly correlated with the length of the index key(s). Other important factors are uniqueness of the index, the length of the clustered index key and wether there are any included columns.

If you create an index on one column you generally get a index less deep than if you create an index on that same column and an additional column. However, in your case, as the index on ID-1 is not declared unique (it can't be), the clustered index key automatically becomes part of the key. Assuming there are no other columns, that additional index will be an exact copy of the clustered index. If you however have additional columns in the table, you might end up with a small difference in index depth. But even then it is usually not worth creating the index.

The difference becomes bigger if you have a lot of additional columns and you are looking at queries that would scan the new index like this one:

SELECT [ID-1],COUNT(1) AS Cnt
  FROM [dbo].[JunctionTable] 
 GROUP BY [ID-1];


As all those additional column are not part of the index the scan has to go through a lot less pages. If you for example had two additional DATETIME columns in that table, the index scan speed would probably double with that new index. But you would have to run this query very often for the index to be worth the additional maintenance overhead.