Insert on duplicate key update using MongoDB
As per MongoDB documentation here Since upsert:true the document is inserted based on the filter and update criteria.

As I am able to see that you are using  { upsert: true } in query statement.

For example:

Update with Upsert

The restaurant collection contains the following documents:

{ "_id" : 1, "name" : "Central Perk Cafe", "Borough" : "Manhattan", "violations" : 3 },
{ "_id" : 2, "name" : "Rock A Feller Bar and Grill", "Borough" : "Queens", "violations" : 2 },
{ "_id" : 3, "name" : "Empire State Pub", "Borough" : "Brooklyn", "violations" : "0" }


The following operation attempts to update the document with name : "Pizza Rat's Pizzaria", while upsert: true :

try {
   db.restaurant.updateOne(
      { "name" : "Pizza Rat's Pizzaria" },
      { $set: {"_id" : 4, "violations" : 7, "borough" : "Manhattan" } },
      { upsert: true }
   );
} catch (e) {
   print(e);
}


Since upsert:true the document is inserted based on the filter and update criteria. The operation returns:

{
   "acknowledged" : true,
   "matchedCount" : 0,
   "modifiedCount" : 0,
   "upsertedId" : 4
}


The collection now contains the following documents:

{ "_id" : 1, "name" : "Central Perk Cafe", "Borough" : "Manhattan", "violations" : 3 },
{ "_id" : 2, "name" : "Rock A Feller Bar and Grill", "Borough" : "Queens", "violations" : 2 },
{ "_id" : 3, "name" : "Empire State Pub", "Borough" : "Brooklyn", "violations" : 4 },
{ "_id" : 4, "name" : "Pizza Rat's Pizzaria", "Borough" : "Manhattan", "violations" : 7 }


The name field was filled in using the filter criteria, while the update operators were used to create the rest of the document.