MySQL: Moving Database from Windows to Linux
You can try Percona wizard tool to configure MySQL server parameter based on Hardware and application in use using https://tools.percona.com/wizard
also there are other online tools available at https://cloud.percona.com/ all percona tools are free.

Some similar answsers to the questions can be found here:
https://stackoverflow.com/questions/11574401/mysql-monitor-queries

https://stackoverflow.com/questions/12026488/mysql-query-monitor-tool