PCP theorem and proof complexity?
I think the following paper will help:
Polylogarithmic-round interactive proofs for coNP collapse the exponential hierarchy

It states that $\mathbf{coNP} \not\subset \mathbf{IP}[\log^{O(1)} n]$ unless the exponential hierarchy collapses. ($\mathbf{IP}[k]$ is the class of languages possessing $k$-move interactive proofs.)

Regarding the natural relation between interactive &amp; probabilistically checkable proofs, I think the above result must help.

I also suggest taking a look at A New Sampling Protocol and Applications to Basing Cryptogaphic Primitives on the Hardness of NP.