Which subproblems of 3SAT are still NP complete?
I asked a similar question on cs.stackexchange.com, perhaps Juho's answer can help you; it contains references to: MONOTONE NAE-3SAT, MONOTONE 1-in-3-SAT, PLANAR 3SAT, k-COLOURABLE MONOTONE NAE-3SAT.

You can find other variants also in this cstheory question: 4-BOUNDED PLANAR 3-CONNECTED 3SAT, POSITIVE PLANAR 1-in-3 SAT.