Minimum number of transpositions
If your transpositions form a permutation $\pi$ then (using the appropriate convention for multiplication) $A\pi = B$ and so $\pi = A^{-1} B$. This shows that we can assume without loss of generality that $A$ is the identity, and the question now becomes: how many transpositions do we need to multiply in the worst case to get any particular permutation? This might be a question you already know how to answer.