Does the Naruto: Ultimate Ninja Storm series miss any of the Manga's plot?
So there is a Naruto wiki which has a lot of info worth checking, but I'm not sure if what you want is in there. I have played the game completely and have read all the manga and I could not find any missing bits apart from that they would (this happens in every Naruto game) make the story a bit shorter and sometimes just a tiny bit, they would take some speech out. That's all I know but I could be wrong. I shouldn't though, I'm pretty sure I remembered it right.