Books on machine learning applications in Biology
At NIPS 2016 most ANN implementations I saw were related to biology were trained on imaging data, thus the kind of comprehensive book you are looking for probably doesn't exist yet.

However, if you utilize the search feature on Amazon.com you'll find: 

Neural Networks for Applied Sciences and Engineering: From Fundamentals to Complex Pattern Recognition

Artificial Neural Networks (Methods in Molecular Biology) 

and this, which seems to best meet your need:

Neural Networks and Genome Informatics, Volume 1 (Methods in Computational Biology and Biochemistry)