Data on Recombination rate and Gene Positions in Humans
A good baseline for this type of research in human genetics is Standards and guidelines for the interpretation of sequence variants from ACMG. It is a guideline for clinicians, and it gives a good sense of good variants data, bad variants data and setting up confidence level.

Try to consolidate data from: 

Population databases


GWAS databases


Exome Aggregation Consortium
1000 Genomes Project (there is data in vcf format which is pretty much what you need)

SNV databases


dbSNP (it is uncurated so you got to be hypercritical)



Disease databases


ClinVar (be aware "12% of interpreted variants have ≥2 submitters in ClinVar , and 21% are interpreted differently")
OMIM
HGMD (it is a gold standard as it is curated, but you could only search for variants but not collect data because you could not download it unless you pay for it)