Hilbert transform too large to store (out of core processing)
I would use a linear phase FIR Hilbert transformer, and use block processing, such as the overlap-add method. That means that you partition the input signal into contiguous non-overlapping blocks and compute the convolution of each block with your filter impulse response. The results are then overlapped and added. Overlap occurs because the result of the convolution is longer than the input block. E.g., if the impulse response has length $N$ and  the blocks have length $L$, the result of the convolution is $N+L-1$, and the last $N-1$ output samples must be added to the first $N-1$ samples of the next output block (assuming that $N&lt;L$, i.e., the output block only overlaps with the next block).

In short:

$$y[n]=\sum_ky_k[n-kL],\qquad y_k[n]=(x_k\star h)[n]$$

where $h[n]$ is the impulse response, $x_k[n]$ is the $k^{th}$ input block, $y_k[n]$ is the convolution of $h[n]$ with $x_k[n]$, and, finally, $y[n]$ is the output signal.