Order of “List of”s in TOC
For Ph.D. theses, some universities (including mine) care about some aspects of the format in minute detail. They should have an office where such things are checked. Find that office and ask. 

If the university doesn't care, then ask your adviser whether anyone cares. If your adviser cares, obey. If your adviser doesn't care but thinks someone else (with some authority in the matter) does, then ask that someone else.

If nobody cares, just do whatever looks reasonable to you.