How to reference to a whole section of other paper that my paper is heavily based on
If I understand your question correctly, your problem is that you want to write a section of your thesis and indicate that the entire section paraphrases someone else's article. I would simply add a sentence near the beginning of that section that says something like "The following discussion is taken from Watson and Crick (2016)".

Generally speaking, plagiarism not an issue if you clearly cite the other person's work. Copyright is not an issue if you only use a small bit of their text and you clearly indicate that it's a direct quotation (i.e., using quotation marks or block indentation) and cite the source.

Finally, you might need to worry about whether or not you've done enough new work to merit approval of your thesis, or to merit publication. Your advisor can tell you if you've done enough new work for your thesis. The editor of the journal you want to publish in, or the organiser of the conference you want to present at, will ultimately decide if you've made a contribution worth publication in that particular venue.