Auto renew Apple Developer Program with different card
If your asking about having another credit card associated to your Apple Developer Program, aside from what you have defined on the Apple ID, the answer is NO.

But if your asking about replacing the default credit card information for your Apple Developer Program, you can do the following:


Login to your Apple Developer Account. 
Click the Membership menu.
Scroll down to Settings section.
Click on Edit default debit/credit card.

and you will be directed to the Apple ID website.
Go to the Payment and Shipping. and click on Edit.
Set your desired credit card information.
The Save button will be enabled then click it to save the changes.



Apple will now charge the new credit card upon the auto-renewal process on the Apple Developer Program renewal date.