Changing keyboard shortcut for cycling through windows? (Lion)
Many applications like Terminal also have a menu item like Window > Cycle Through Windows. It stays assigned to ⌘&#x60; even if you change the shortcut in the Keyboard &amp; Text Input preferences.

You could add a custom shortcut for Cycle Through Windows in the Application Shortcuts preferences, or disable it with defaults write -g NSUserKeyEquivalents -dict-add "Cycle Through Windows" nul.

You could also force TotalTerminal to use ⌘&#x60; by editing ~/Library/Preferences/com.apple.Terminal.plist directly.

&lt;key&gt;ToggleVisor&lt;/key&gt;
&lt;dict&gt;
    &lt;key&gt;KeyCode&lt;/key&gt;
    &lt;integer&gt;50&lt;/integer&gt;
    &lt;key&gt;Modifiers&lt;/key&gt;
    &lt;integer&gt;9437184&lt;/integer&gt;
&lt;/dict&gt;