Fusion Drive seems to be messed up
To rebuild your Fusion Drive almost non-destructively you have to convert your main volume (the HDD) to a Core Storage Volume Group first, then add the SSD as a physical volume and expand the Logical Volume to the full size of the now expanded Volume Group. All data on the SSD (volume: Untitled) will be erased, so back it up.


Backup your main volume and if necessary the volume "Untitled" on your SSD to an external backup drive.
Detach the backup drive and all other external drives
Boot to Recovery Mode by entering cmdR immediately after the boot chime.
Open Disk Utility and check all volumes and disks for errors and repair them.
But don't repair/rebuild the Fusion Drive without a backup, if you are asked to. You will loose all your data.
If you have a (Time Machine) backup, you may now repair the Fusion Drive, check it for errors, quit Disk Utility, open Restore From Time Machine Backup, restore your backup data and finally reboot to the restored system.
Quit Disk Utility
Open Terminal in the menubar


Enter diskutil list
Example list

/dev/disk0
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:      GUID_partition_scheme                        *121.3 GB   disk0
   1:                        EFI EFI                     209.7 MB   disk0s1
   2:                  Apple_HFS SSD                121.0 GB   disk0s2
/dev/disk1
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:      GUID_partition_scheme                        *3.0 TB     disk1
   1:                        EFI EFI                     209.7 MB   disk1s1
   2:                  Apple_HFS HDD            3.0 TB     disk1s2
   3:                 Apple_Boot Recovery HD             650.0 MB   disk1s3
/dev/disk2
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:     Apple_partition_scheme                         *1.3 GB    disk2
   1:        Apple_partition_map                         30.7 KB    disk2s1
   2:                  Apple_HFS OS X Base System        *1.3 GB    disk2s2
/dev/disk3-disk13 ...belong to the OS X Base System (your recovery system you booted to previously)  


Disk0 is your SSD, disk1 is your HDD and disk2 is the OS X Base System of your Recovery HD
Now convert your main volume (the HDD) to a Core Storage Volume Group:

diskutil cs convert disk1s2


If you get a message stating that "the disk can't be unmounted, converted volume won't appear until it's unmounted", exit Terminal and reboot to Recovery Mode
Open Disk Utility and check the newly build Core Storage volume.
Quit Disk Utility and open Terminal
Now you have to convert the SSD to a Physical Volume. Enter:

diskutil list


to get the disk identifier of the HFS volume on the SSD and 

diskutil cs list


to get the Logical Volume Group UUID (LVGUUID) and the Logical Volume UUID (LVUUID). It's the first and the last one listed.

To add the SSD volume to the Volume Group enter: diskutil cs addDisk LVGUUID DiskIdentifier

Example:

diskutil cs addDisk DA484337-F888-474B-90B5-232D14FD9B30 disk0s2

Now expand the Logical Volume with diskutil cs resizeVolume LVUUID size with size a little bit smaller than the size of the Logical Volume Group

Example:

diskutil cs resizeVolume 999ACBDC-045E-44FF-BBFD-54F56D069722 3106g


I also have a 3,1 TB Fusion Drive (the output of diskuil cs list is listed below) and the size of the LVG is 3,120,722,075,648 Byte and the size of the Logical Volume is 3,106,191,572,992 Byte:

CoreStorage logical volume groups (1 found)
|
+-- Logical Volume Group DA484337-F888-474B-90B5-232D14FD9B30
    =========================================================
    Name:         Macintosh HD
    Status:       Online
    Size:         3120722075648 B (3.1 TB)
    Free Space:   114688 B (114.7 KB)
    |
    +-&lt; Physical Volume A3326508-CF3D-4ABC-8157-839074724063
    |   ----------------------------------------------------
    |   Index:    0
    |   Disk:     disk0s2
    |   Status:   Online
    |   Size:     120988852224 B (121.0 GB)
    |
    +-&lt; Physical Volume 24BB36F1-B9E5-418E-BD8C-3F2C6DBF4B44
    |   ----------------------------------------------------
    |   Index:    1
    |   Disk:     disk1s2
    |   Status:   Online
    |   Size:     2999733223424 B (3.0 TB)
    |
    +-&gt; Logical Volume Family AA514A06-08D2-4F56-A0C5-E82A94E60A82
        ----------------------------------------------------------
        Encryption Status:       Unlocked
        Encryption Type:         None
        Conversion Status:       NoConversion
        Conversion Direction:    -none-
        Has Encrypted Extents:   No
        Fully Secure:            No
        Passphrase Required:     No
        |
        +-&gt; Logical Volume 999ACBDC-045E-44FF-BBFD-54F56D069722
            ---------------------------------------------------
            Disk:                  disk3
            Status:                Online
            Size (Total):          3106191572992 B (3.1 TB)
            Conversion Progress:   -none-
            Revertible:            No
            LV Name:               Macintosh HD
            Volume Name:           Macintosh HD
            Content Hint:          Apple_HFS

After successfully expanding the Logical Volume enter exit and quit Terminal
Open Disk Utility and check the Fusion Drive volume for errors.
Quit Disk Utility and reboot to your Fusion Drive


If everything fails check the second part ('Rebuild Fusion Drive' (recommended if you have a Time Machine backup)) of my answer here.