can't shrink the system partition in order to clone and swap disk
I used CCC to clone my internal 1T hd to an external SSD. You need to format the SSD before the clone. The drives do not need to be the same size.  The data has to fit.

Carbon Copy Cloner (CCC) will copy your startup drive to an external  firewire drive.  You can boot from the external drive to verify that you have a good clone. When you upgrade your existing startup drive, you can at any time boot from your external drive and go back to your existing system.
http://www.bombich.com/software/ccc.html

Question: what about the EFI partition

Created when you initialize/format the drive.  CCC is a partition cloner not a volume cloner. 

the others partitions like recovery

There is an option to add this at the end of the clone.  If it on the source volume, you will get a prompt. I gather there is a way to clone the recovery partition manually.  It did prompt me when I clone my one partition startup drive. https://bombich.com/kb/ccc5/cloning-apples-recovery-hd-partition

or VM ? 

I don't see no VM in my distutil list.

Here is the result after I cloned Macintosh HD [ /dev/disk0 ]to Macintosh SSD [ /dev/disk4 ].  I don't know why the two are different nor do I know what will happen when I swap the internal and external drives.  I assume it will work. 'cause I heard it will.  

mac $ diskutil list
/dev/disk0
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:      GUID_partition_scheme                        *1.0 TB     disk0
   1:                        EFI EFI                     209.7 MB   disk0s1
   2:          Apple_CoreStorage                         999.3 GB   disk0s2
   3:                 Apple_Boot Recovery HD             650.0 MB   disk0s3
/dev/disk1
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:                  Apple_HFS Macintosh HD           *999.0 GB   disk1
                                 Logical Volume on disk0s2
                                 B...9
                                 Unencrypted

/dev/disk4
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:      GUID_partition_scheme                        *1.0 TB     disk4
   1:                        EFI EFI                     209.7 MB   disk4s1
   2:                  Apple_HFS Macintosh SSD           999.2 GB   disk4s2
   3:                 Apple_Boot Recovery HD             784.2 MB   disk4s3


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