Disable system wide Ctrl+Click in OS X
You can map control+click to command+click globally with KeyRemap4Macbook. Put the following in your private.xml:

&lt;root&gt;
    &lt;item&gt;
        &lt;name&gt;Control+LeftClick Command+LeftClick&lt;/name&gt;
        &lt;appendix&gt;Control+LeftClick Command+LeftClick&lt;/appendix&gt;
        &lt;identifier&gt;control_click_to_command_click&lt;/identifier&gt;
        &lt;autogen&gt;--PointingButtonToPointingButton-- PointingButton::LEFT, ModifierFlag::CONTROL_L, PointingButton::LEFT, ModifierFlag::COMMAND_L&lt;/autogen&gt;
    &lt;/item&gt;
&lt;/root&gt;


This will cause any ctrl-click you type to be seen by the system as ⌘-click.  That will prevent the contextual menu (since you won't actually be producing a ctrl).  You'll still need to change your IDE settings, but this way you can keep the muscle-memory for the shortcut.