How to limit the maximum output of ADC Signal Conditioning Circuit
A few comments:

LM741 op-amps won't work (properly) at ±3.8 V supply.
Stages 1, 2 and 3 can be replaced with a single inverting gain stage.
It's not clear why you are using a differential output for an ADC feed but it looks OK.

A Google image search for voltage+limiting+analog+signal threw up the following interesting technique.

Figure 1. This clipping circuit uses a complementary pair of op amps to prevent excessive positive (U1) and negative signal excursions (U2) of the input signal, to maximum available signal dynamic range without damaging overload. Source: Electronic Design.

A simple op-amp clipper (Fig. 1) prevents these problems. The maximum allowable input voltage is applied to the non-inverting input of U1, and the output is fed back to the inverting input via small-signal diode D1. The ADC’s reference voltage can be used for the clipping reference if available. When the input voltage is below the reference, U1’s output is driven to the positive rail and D1 is reverse-biased, so the input signal passes through without being altered.
When the input goes above the clamp voltage, the op-amp output reverses and closes the loop through D1. As a result, it effectively becomes a unity-gain follower to the clamp voltage. Input resistor R1 limits the amount of current the op-amp output has to sink. A second op amp (U2) performs the complementary negative clipping function, preventing the signal from going below ground. Thus, in this example, the output signal is restricted to 4.096 V to 0 V out.

The article goes on to explain some of the unique challenges this circuit presents to the op-amp regarding the back-to-back diodes across their inputs. There are also considerations for slew-rate which affects the maximum frequency of operation and rail-to-rail operation. The article is worth a read.

Figure 2. With the LT6015 and bipolar 10-V supplies, the circuit clamps a 7 V p-p sine wave at 0 and +4 V. (Same source as Figure 1.)


Can this be used in the earlier sections?

Probably a bad idea.

Figure 3. Various 2nd-order filter responses. Source: Electronics Tutorials.
Depending on your low-pass filter frequency response you may have a peak at the pole and this would result in a higher output voltage than your clipper. See the linked article for more.