charging a bottom balanced lithium battery
I can help with a different POV as I have Bottom Balanced for several years. 

Let's clear up one thing quick. You do not give up or do away the Balance Leads. They are still used to monitor things time from time. Jus tnot used for charging. 

OK start with a different POV with a Stupid Question. What is the capacity of a battery when at 100% SOC? You cannot answer the question. Next Question. What is the capacity of a battery at 0% SOC. Easy answer, 0 AH for any battery or type. 

LiFeP04 charge and discharge are very flat, and you cannot determine the SOC from voltage. Only place where SOC is accurate is at the 0% SOC or Bottom (2.5 volts), and 3.65 volt at 100% SOC. Capacity at 25 vpx is 0 AH, and at 3.65 is unknown. 

So what is the capacity of a Bottom Balanced pack charged with 90 AH. It has 90 AH each and every cell. All cells will reach 2.5 volts at the same time, thus eliminating over discharge. No cells in a series string will have any energy left to drive weaker adjacent cells to reverse polarity thus destroying it. 

When you buy say 100 AH Prismatic Cells, the capacity of each cells varies -5 to + 10%. That means the weakest cell can be 95 AH, and the strongest 110 AH, a 15 AH distance. So say you make a 8S pack, and Top Balance. What is the capacity? 95 AH right? Sure you have cells with more than that, but to use it means you would have to drive the weaker cells into reverse polarity and destroy them. When you charge the cells to 100% SOC just means they are 100% SOC and not squat about capacity. Capacity is determined by the weakest cell in the chain. 

Nothing destroys a lithium battery faster than over discharge. Not much a problem with other chemistries, huge problem for Lithium. Right now your mind is stuck in a box; Thou Shall Fully Charge My Battery. 

That is a sure fire way to destroy Lithium Batteries. Change the charging strategy and logic. Start from a know point of knowing both Capacity and SOC which is at 2.5 volts = 0 AH capacity. Now wire the batteries in series and charge until the first cell reach roughly 3.7 volts and terminate charge. Note voltage, AH input, and which cell shot up to 3.7 volts very quickly at termination.

Example 95 AH went in, on a 8S LFP pack the voltage was say 27.1 volts, cell 3 went high. You know now you have a 95 AH pack and need to set charge voltage to just slightly less than 27.1 volts. 

When Bottom Balanced if you discharge too deeply, no cell is destroyed, they all hit 0% SOC at the same time and the voltage collapses from 11 volts to useless in a few seconds. In a Top Balanced system one cell will be fully discharge before any others, and can be destroyed byy adjacent cells if not caught very quickly. 

There is one more huge benefit from Bottom Balance. Double to Triple cycle life. By limiting SOC to less than 100% adds cycle life. Limit to 95% SOC on the charge cycles, and limit discharge to 90% DOD, and you get Double to Triple cycle life. All you gotta do is get out of that Thou Shall Fully Charge My Battery box you are trapped inside of. 

Why is Top Balanced used commercially? Two reasons. Consumers are idiots and cannot be trusted. Sure enough some idiot will burn something up and look for deep pockets. 2nd reason is it is very easy to design and build Top Balance Chargers. It generate up sales, and shortens battery life which is good for the manufacture. Stupid Consumers will never know. 

Bottom Balance takes skill and understanding of what is going on. Use the Balance Leads to check voltages from time to time. Do a full discharge test every 100 cycles and check Balance.