Stability and loop gain of negative feedback systems
Some comments from my side:

1.) The stability check in the BODE diagram concerns the LOOP GAIN response only (because once you did mention "closed-loop system" in your text.)

2.) The shown system is "conditionally stable". That means: It is stable - regardless the properties at the frequency A. However, if you REDUCE the gain within the loop until the gain crosses the point A (the phase remains unchanged) the closed-loop system will be unstable.

Such conditional stable system should be avoided because a gain reduction can happen due to aging or other damping effects. Remember: Classical feedback systems with a continuos decreasing loop phase will become unstable (under closed-loop conditions) for rising gain values (beyond a certain limit) only.

As to your next question - the input signal Vi does not influence stability properties at all. Stability is determined by the loop components only. That is the reason, we investigate the loop gain only.  

EDIT:   Here is an explanation why the closed loop (your example) will be stable:
If a closed-loop system is unstable, this point of instability also must be "stable". That means - either we will have "stable" and continuous oscillations or the output is latched at one of the supply voltage rails. In both cases, this point of instability is fixed. 

Now - what happens at the point A in your example? Here we have a rising phase which is identical to a NEGATIVE group delay at this point (group delay is defined as the negative phase slope). This is an indication for the unability of the closed-loop system to let the amplitudes rise (oscillations or latching at the supply rail). Rather, the system returns to a stable operating point.

A final information: The stability check investigates either (a) the -180deg line or (b) the -360 deg line. This depends on what you are investigating: (a) Either the simple product GH or (b) the loop gain LG which is LG=-GH.