Why are the USB signal pins always swapped on USB bridges?
There are (in this context) two types of USB Micro-B connector; I tend to think of them as "long edge close to the PCB" and "long edge away from the PCB".  You're using the "long edge close to the PCB" kind.  Use the other kind and the order of the pins flips.

Unfortunately there doesn't seem to be a search term (for Digikey or Element14, at least) that can be used to discriminate between the two types, so you have to check the datasheets individually.

Here are two example datasheets, the TE2013499-1 and the Molex 475900001 (the latter is actually an AB but that changes nothing).  Notice how the insertion orientation of the micro-B plug is inverted with respect to each other?