Ckeditor can not create new profile with input format
It seems to be a problem when creating or cloning a ckeditor profile, the module doesn't insert registers into the table ckeditor_input_format, so we can do that by the following SQL queries

INSERT INTO `ckeditor_input_format` (name, format) VALUES ('&lt;profile_name&gt;','filtered_html')
INSERT INTO `ckeditor_input_format` (name, format) VALUES ('&lt;profile_name&gt;','full_html')
INSERT INTO `ckeditor_input_format` (name, format) VALUES ('&lt;profile_name&gt;','plain_text')


The name  must be replaced with the name of the profile you created with ckeditor.