How to find the distance between two quasars
Edit: I found you a very relevant paper!

http://arxiv.org/pdf/astro-ph/0007341v1.pdf seems to be solving exactly your problems for sources with arbitrary angular separation $\alpha$. Equations (12) and (14) will give you the comoving distance $\chi_2'$ and redshift $z_2'$ between them at the epoch when $Q_1$ received light from $Q_2$. You will have to solve these equations numerically to find the solutions, which will be more complicated depending on the cosmological model you use.



Have a read of these notes http://arxiv.org/abs/astro-ph/9905116. They are my go-to when trying to work out cosmological distances.