Problems about value log2(IP/Input) less than zero in ChIP-seq?
Seconding what Devon says:

Use a proper normalization technique such as TMM from edgeR. For applying this to bigwig files you could follow my tutorial at biostars.org.

My two cents beyond that:

I would not use enrichment over input as input is hard to normalize and can be sparse depending on sequencing depth. Therefore, you might get biased enrichments that do not well reflect reality, especially if counts in IP or input (of both) are low. I personally only use input for peak calling, and for plots like this then compare IPs among each other.

So the strategy would be to first normalize your bigwigs (I guess you use these for the plots?) using the strategy as linked above, and then use these robust CPMs to make the plots without any input samples, only using the IPs. You can use MA-plots to explore whether samples are properly normalized. I made a little code suggestion here in this biostars post on how to do this starting basically from a matrix of raw counts using edgeR. This is basically (from the TMM normalization standpoint) the same as in the first link, but then doing pairwise MA-plots to see whether TMM properly centers the majority of points along y-axis being somewhat zero. Normalization is key in any experiment, therefore I always recommend to use these kinds of plots for diagnostics.