RepeatMasker annotation
RepeatMasker comes with a buildSummary.pl script.

You can input the .out file from your RepeatMasker run and there is a flag to enter your species

e.g.

buildSummary.pl -species Vertebrates rmrun.out &gt; mysummary.tbl


In the mysummary.tbl, the summary will not assume your run to be Homo (default).