Detecting structural variants with MinION data
There was a Structural Variant breakout session at the London Calling conference this year. Unfortunately I didn't attend that session, but MinION community members have access to Constance Donnell's summary of that:

https://community.nanoporetech.com/posts/breakout-structural-varia

Here are my attempts at grabbing non-creative chunks from those notes:


Professor Wigard Kloosterman has been developing a bioinformatics pipeline called NanoSV for mapping genomic structural variants in patients with congenital abnormalities
Tomas Sesani at the University of Utah studied the precise copy number of duplicated genes in individual virus genes over time, and tracked the SNP within copy number variable regions of the genome [no public tool mentioned]
Dr. Sudha Rao from Genotypic Technology in India used the MinION sequencer with Sniffles for structural variation calling


ONT have said that the sessions/talks from London Calling 2017 will all be made publicly available at some point in the future.