convert tRNA coordinates Result to Fasta format
You can select “Output BED format” on the tRNAscan-SE server:



Given the output BED format and your input reference in FASTA format, you can easily generate a FASTA file of tRNA sequences via bedtools getfasta:

bedtools getfasta -name -s -fo ‹output.fasta› -fi ‹reference.fasta› -bed ‹tRNAscan-SE-output.bed›